Wall clock time and date at job start Mon Mar 30 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47010 * 239.99544 * 3 2 1 5 5 H 1.48497 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 119.99862 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00107 * 161.48833 * 7 2 1 9 9 C 1.41401 * 120.00023 * 341.49411 * 7 2 1 10 10 C 1.40714 * 120.24188 * 335.87578 * 9 7 2 11 11 C 1.37616 * 119.74644 * 179.79080 * 10 9 7 12 12 C 1.38646 * 120.24473 * 0.49298 * 11 10 9 13 13 C 1.50697 * 119.74710 * 179.75900 * 12 11 10 14 14 C 1.52998 * 109.47366 * 269.97919 * 13 12 11 15 15 H 1.09001 * 109.46876 * 305.00012 * 14 13 12 16 16 Cl 1.80299 * 109.47157 * 65.00213 * 14 13 12 17 17 C 1.50700 * 109.47076 * 185.00284 * 14 13 12 18 18 O 1.20757 * 120.00183 * 239.99886 * 17 14 13 19 19 C 1.38631 * 120.49686 * 359.74218 * 12 11 10 20 20 C 1.37617 * 120.25284 * 0.02562 * 19 12 11 21 21 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.12991 * 0.02562 * 10 9 7 23 23 H 1.07994 * 119.88307 * 180.22989 * 11 10 9 24 24 H 1.08996 * 109.47050 * 29.98541 * 13 12 11 25 25 H 1.09007 * 109.46661 * 149.98049 * 13 12 11 26 26 H 1.07999 * 119.99947 * 60.00617 * 17 14 13 27 27 H 1.08002 * 119.87111 * 179.97438 * 19 12 11 28 28 H 1.08002 * 120.12491 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2363 -0.2964 9 6 1.3559 -2.4047 0.3898 10 6 0.2297 -2.3543 1.2318 11 6 -0.3998 -3.5212 1.6007 12 6 0.0780 -4.7437 1.1543 13 6 -0.6167 -6.0149 1.5696 14 6 0.0036 -6.5342 2.8682 15 1 1.0794 -6.6500 2.7361 16 17 -0.3155 -5.3598 4.1985 17 6 -0.6059 -7.8673 3.2181 18 8 -1.1960 -8.0060 4.2624 19 6 1.1898 -4.8055 0.3284 20 6 1.8321 -3.6511 -0.0571 21 1 -0.4850 0.8400 0.0004 22 1 -0.1417 -1.4033 1.5841 23 1 -1.2666 -3.4848 2.2439 24 1 -1.6764 -5.8148 1.7277 25 1 -0.5013 -6.7644 0.7866 26 1 -0.5148 -8.6987 2.5348 27 1 1.5536 -5.7633 -0.0131 28 1 2.6983 -3.7016 -0.7002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052230949.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:35 Heat of formation + Delta-G solvation = -54.100482 kcal Electronic energy + Delta-G solvation = -14000.652816 eV Core-core repulsion = 11427.147288 eV Total energy + Delta-G solvation = -2573.505528 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.24733 -39.39390 -36.87994 -35.83657 -33.97752 -31.24093 -30.83064 -27.73716 -24.92838 -22.82225 -22.11547 -21.44188 -19.18017 -17.64195 -17.20781 -16.64737 -16.20624 -15.69731 -15.37843 -15.17041 -14.42235 -14.23073 -13.94912 -13.73493 -13.27878 -12.94203 -12.73314 -12.44478 -12.21859 -12.11130 -11.68926 -11.49451 -11.36188 -11.15927 -10.94813 -10.52596 -9.26812 -9.14412 -8.62422 -6.30219 0.90158 1.07601 1.22925 1.36463 1.36678 1.47453 1.54126 2.20035 2.73474 3.20583 3.73186 4.09745 4.11335 4.41439 4.49975 4.54527 4.70446 4.80243 5.02719 5.14149 5.19486 5.44804 5.52630 5.76787 6.03437 6.15682 6.30919 6.37801 6.44650 6.76915 6.98101 7.09992 8.33951 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.049789 B = 0.005691 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.232790 B = 4919.183539 C = 5174.310483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.506 4.506 8 H 0.074 0.926 9 C 0.078 3.922 10 C -0.197 4.197 11 C -0.084 4.084 12 C -0.204 4.204 13 C -0.046 4.046 14 C -0.073 4.073 15 H 0.142 0.858 16 Cl -0.193 7.193 17 C 0.354 3.646 18 O -0.483 6.483 19 C -0.079 4.079 20 C -0.246 4.246 21 H 0.286 0.714 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.123 0.877 26 H 0.179 0.821 27 H 0.134 0.866 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -11.286 1.266 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.076 3.924 10 C -0.217 4.217 11 C -0.102 4.102 12 C -0.205 4.205 13 C -0.084 4.084 14 C -0.117 4.117 15 H 0.160 0.840 16 Cl -0.167 7.167 17 C 0.210 3.790 18 O -0.354 6.354 19 C -0.097 4.097 20 C -0.265 4.265 21 H 0.097 0.903 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.086 0.914 25 H 0.141 0.859 26 H 0.195 0.805 27 H 0.152 0.848 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.216 -11.121 1.922 11.288 hybrid contribution 0.343 1.508 0.018 1.546 sum 0.127 -9.613 1.940 9.808 Atomic orbital electron populations 1.69889 1.09002 1.30399 1.35954 1.26732 0.95439 1.04477 0.91345 0.85320 0.78857 0.75923 0.80029 1.18117 1.19327 1.18779 1.19836 0.98591 0.92921 1.42195 0.90806 1.17960 0.91810 0.93324 0.89281 1.21221 1.00747 0.97042 1.02694 1.20713 0.98277 0.92949 0.98257 1.19257 1.00767 0.93612 1.06861 1.20414 0.98483 0.95615 0.93844 1.25654 1.05777 0.90561 0.89731 0.84009 1.98737 1.96925 1.65498 1.55576 1.26941 0.73138 0.91479 0.87401 1.90453 1.32630 1.85196 1.27152 1.20783 0.94795 0.97292 0.96831 1.21188 1.04516 0.93254 1.07561 0.90347 0.89282 0.89027 0.91428 0.85850 0.80522 0.84793 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.45 10.98 21.83 0.24 -44.21 15 2 C 0.03 1.79 5.13 85.26 0.44 2.23 15 3 Si 0.98 39.17 29.60 68.60 2.03 41.20 15 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 15 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 15 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 15 7 C -0.51 -27.75 9.05 23.46 0.21 -27.53 15 8 H 0.07 3.89 7.91 -2.92 -0.02 3.87 15 9 C 0.08 4.23 5.58 -21.29 -0.12 4.11 15 10 C -0.20 -10.54 8.70 22.73 0.20 -10.34 15 11 C -0.08 -3.78 8.65 22.22 0.19 -3.59 15 12 C -0.20 -7.55 4.91 -19.67 -0.10 -7.64 15 13 C -0.05 -1.15 4.88 29.85 0.15 -1.01 15 14 C -0.07 -1.68 3.29 29.85 0.10 -1.58 15 15 H 0.14 2.82 8.14 -2.39 -0.02 2.80 15 16 Cl -0.19 -6.41 26.33 -2.72 -0.07 -6.49 15 17 C 0.35 6.18 11.12 71.24 0.79 6.98 15 18 O -0.48 -13.13 16.83 -1.44 -0.02 -13.15 15 19 C -0.08 -3.00 9.67 22.22 0.21 -2.78 15 20 C -0.25 -11.49 9.80 22.73 0.22 -11.26 15 21 H 0.29 14.01 8.30 -92.71 -0.77 13.24 15 22 H 0.09 5.12 6.16 -2.91 -0.02 5.10 15 23 H 0.09 3.98 7.87 -2.91 -0.02 3.96 15 24 H 0.07 1.77 8.08 -2.39 -0.02 1.75 15 25 H 0.12 2.03 8.08 -2.38 -0.02 2.01 15 26 H 0.18 0.95 8.06 -2.91 -0.02 0.93 15 27 H 0.13 3.80 8.06 -2.91 -0.02 3.77 15 28 H 0.10 4.25 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -67.39 264.53 5.63 -61.76 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.16 Total: 13.31 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 2.30 Total: -52.42 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.24 Total: -44.21 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.02 Total: -13.15 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Atomic # 17 Polarization: -6.41 SS G_CDS: -0.07 Total: -6.49 kcal Total: -67.39 5.63 -61.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052230949.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.660 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds