Wall clock time and date at job start Mon Mar 30 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48503 * 109.46816 * 89.99672 * 3 2 1 5 5 H 1.48503 * 109.47174 * 209.99772 * 3 2 1 6 6 H 1.48503 * 109.47011 * 330.00021 * 3 2 1 7 7 C 1.37875 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99549 * 186.17787 * 7 2 1 9 9 C 1.50694 * 120.00203 * 6.17678 * 7 2 1 10 10 H 1.09000 * 109.47366 * 30.49051 * 9 7 2 11 11 S 1.81403 * 109.47464 * 150.49694 * 9 7 2 12 12 C 1.81403 * 102.99709 * 294.99766 * 11 9 7 13 13 C 1.52993 * 109.47118 * 179.97438 * 12 11 9 14 14 O 1.42898 * 109.47282 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47116 * 270.49509 * 9 7 2 16 16 C 1.38233 * 119.99884 * 300.43267 * 15 9 7 17 17 C 1.38234 * 120.00048 * 179.79054 * 16 15 9 18 18 C 1.38237 * 120.00020 * 0.43238 * 17 16 15 19 19 C 1.38236 * 119.99656 * 359.82023 * 18 17 16 20 20 C 1.38231 * 120.00273 * 359.97330 * 19 18 17 21 21 H 0.97000 * 119.99981 * 175.21283 * 1 2 3 22 22 H 1.08997 * 109.47215 * 300.00432 * 12 11 9 23 23 H 1.09003 * 109.47110 * 59.99834 * 12 11 9 24 24 H 1.08997 * 109.47806 * 300.00530 * 13 12 11 25 25 H 1.09003 * 109.46890 * 60.00160 * 13 12 11 26 26 H 0.96700 * 114.00007 * 180.02562 * 14 13 12 27 27 H 1.08010 * 120.00089 * 359.97438 * 16 15 9 28 28 H 1.08004 * 120.00173 * 180.27328 * 17 16 15 29 29 H 1.07996 * 120.00217 * 179.83776 * 18 17 16 30 30 H 1.08000 * 119.99751 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.00534 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0798 -1.1966 0.1012 9 6 1.2576 -2.4954 -0.1393 10 1 0.3614 -2.3374 -0.7393 11 16 2.3217 -3.7191 -0.9524 12 6 2.5573 -3.0183 -2.6089 13 6 3.4491 -3.9482 -3.4339 14 8 3.6342 -3.3965 -4.7390 15 6 0.8656 -2.9989 1.2260 16 6 1.8394 -3.2640 2.1707 17 6 1.4796 -3.7216 3.4245 18 6 0.1466 -3.9227 3.7307 19 6 -0.8267 -3.6626 2.7842 20 6 -0.4673 -3.2009 1.5319 21 1 -0.4850 -0.8371 -0.0701 22 1 1.5898 -2.9124 -3.0996 23 1 3.0313 -2.0403 -2.5257 24 1 4.4166 -4.0537 -2.9431 25 1 2.9754 -4.9264 -3.5172 26 1 4.1906 -3.9349 -5.3184 27 1 2.8811 -3.1107 1.9302 28 1 2.2401 -3.9246 4.1641 29 1 -0.1343 -4.2828 4.7093 30 1 -1.8681 -3.8201 3.0232 31 1 -1.2276 -2.9980 0.7923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055022742.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:55 Heat of formation + Delta-G solvation = -43.492183 kcal Electronic energy + Delta-G solvation = -14417.146450 eV Core-core repulsion = 11981.977733 eV Total energy + Delta-G solvation = -2435.168717 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.47905 -36.77010 -34.11006 -30.98650 -30.47697 -30.17373 -26.96318 -23.46837 -22.56775 -21.76782 -20.47995 -17.47749 -17.16317 -16.15049 -15.28639 -15.02508 -14.59094 -14.08382 -13.90017 -13.74509 -13.10180 -12.78655 -12.57821 -12.30343 -12.01009 -11.54750 -11.22678 -10.92243 -10.82611 -10.37694 -10.31227 -10.22440 -9.84196 -9.23011 -9.03817 -8.63473 -8.19653 -7.77237 -6.94179 -6.45429 -4.33388 1.97421 2.13749 2.69682 3.33611 3.37229 3.52195 3.64806 4.35148 4.63302 4.71877 5.13387 5.30596 5.37315 5.54252 5.57992 5.70321 5.71098 5.95844 6.14713 6.25071 6.30471 6.44707 6.49459 6.72233 6.82967 7.15449 7.20763 7.48332 7.66575 7.71612 7.80409 8.19640 8.56304 9.33451 10.75658 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.010303 C = 0.007082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.191373 B = 2716.957934 C = 3952.998318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.030 3.970 3 Si 1.071 2.929 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.583 4.583 8 H 0.066 0.934 9 C 0.124 3.876 10 H 0.056 0.944 11 S -0.315 6.315 12 C -0.072 4.072 13 C 0.095 3.905 14 O -0.573 6.573 15 C -0.022 4.022 16 C -0.096 4.096 17 C -0.129 4.129 18 C -0.145 4.145 19 C -0.124 4.124 20 C -0.119 4.119 21 H 0.272 0.728 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.376 0.624 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -7.056 -0.577 7.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.179 4.179 3 Si 0.898 3.102 4 H -0.211 1.211 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.624 4.624 8 H 0.085 0.915 9 C -0.003 4.003 10 H 0.074 0.926 11 S -0.084 6.084 12 C -0.220 4.220 13 C 0.017 3.983 14 O -0.378 6.378 15 C -0.025 4.025 16 C -0.116 4.116 17 C -0.147 4.147 18 C -0.163 4.163 19 C -0.143 4.143 20 C -0.139 4.139 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.110 0.890 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.222 0.778 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.131 -5.936 0.062 6.711 hybrid contribution -0.014 -0.889 -0.613 1.080 sum 3.118 -6.825 -0.551 7.523 Atomic orbital electron populations 1.70780 1.06901 1.31430 1.43310 1.25988 0.96383 1.02764 0.92758 0.83507 0.74879 0.74702 0.77156 1.21094 1.21035 1.20725 1.22043 0.95209 0.89652 1.55463 0.91528 1.19852 0.95698 0.93838 0.90928 0.92574 1.85943 1.71500 1.38227 1.12693 1.22862 1.02383 1.02373 0.94373 1.21851 0.98459 0.95316 0.82691 1.86503 1.74059 1.52427 1.24825 1.20068 0.92660 0.93062 0.96719 1.20949 0.99759 0.98177 0.92684 1.21016 0.95831 1.01166 0.96693 1.20878 0.93337 1.03278 0.98845 1.20935 0.98548 1.00815 0.93955 1.20956 0.95803 1.00282 0.96827 0.91582 0.90653 0.88997 0.93063 0.93353 0.77769 0.86195 0.87104 0.87271 0.87099 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.63 55.43 0.76 -24.59 16 2 C 0.03 0.80 5.45 -17.82 -0.10 0.71 16 3 Si 1.07 24.31 29.91 -169.99 -5.08 19.23 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.58 -15.34 7.56 -34.44 -0.26 -15.60 16 8 H 0.07 1.79 7.82 -52.49 -0.41 1.37 16 9 C 0.12 2.99 2.10 -29.03 -0.06 2.93 16 10 H 0.06 1.45 6.46 -51.92 -0.34 1.12 16 11 S -0.31 -6.74 20.76 -107.50 -2.23 -8.97 16 12 C -0.07 -1.41 6.10 37.15 0.23 -1.18 16 13 C 0.10 1.50 7.05 37.15 0.26 1.76 16 14 O -0.57 -8.45 13.66 -35.23 -0.48 -8.93 16 15 C -0.02 -0.50 4.76 -104.62 -0.50 -1.00 16 16 C -0.10 -2.06 8.89 -39.58 -0.35 -2.41 16 17 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 18 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 19 C -0.12 -2.29 10.05 -39.58 -0.40 -2.68 16 20 C -0.12 -2.52 9.48 -39.58 -0.38 -2.89 16 21 H 0.27 7.66 6.48 -40.82 -0.26 7.39 16 22 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 23 H 0.09 1.98 8.00 -51.92 -0.42 1.56 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.38 3.39 9.12 45.56 0.42 3.80 16 27 H 0.12 2.58 8.05 -52.48 -0.42 2.16 16 28 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.11 2.31 7.95 -52.49 -0.42 1.89 16 LS Contribution 283.27 15.07 4.27 4.27 Total: -1.00 -29.73 283.27 -8.30 -38.04 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.18 Total: 7.04 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.35 Total: -26.08 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.76 Total: -24.59 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.48 Total: -8.93 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -2.23 Total: -8.97 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.73 -8.30 -38.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055022742.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.455 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds