Wall clock time and date at job start Mon Mar 30 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48503 * 109.46816 * 89.99672 * 3 2 1 5 5 H 1.48503 * 109.47174 * 209.99772 * 3 2 1 6 6 H 1.48503 * 109.47011 * 330.00021 * 3 2 1 7 7 C 1.37875 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99549 * 186.17787 * 7 2 1 9 9 C 1.50694 * 120.00203 * 6.17678 * 7 2 1 10 10 H 1.09000 * 109.47366 * 30.49051 * 9 7 2 11 11 S 1.81403 * 109.47464 * 150.49694 * 9 7 2 12 12 C 1.81403 * 102.99709 * 294.99766 * 11 9 7 13 13 C 1.52993 * 109.47118 * 179.97438 * 12 11 9 14 14 O 1.42898 * 109.47282 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47116 * 270.49509 * 9 7 2 16 16 C 1.38233 * 119.99884 * 300.43267 * 15 9 7 17 17 C 1.38234 * 120.00048 * 179.79054 * 16 15 9 18 18 C 1.38237 * 120.00020 * 0.43238 * 17 16 15 19 19 C 1.38236 * 119.99656 * 359.82023 * 18 17 16 20 20 C 1.38231 * 120.00273 * 359.97330 * 19 18 17 21 21 H 0.97000 * 119.99981 * 175.21283 * 1 2 3 22 22 H 1.08997 * 109.47215 * 300.00432 * 12 11 9 23 23 H 1.09003 * 109.47110 * 59.99834 * 12 11 9 24 24 H 1.08997 * 109.47806 * 300.00530 * 13 12 11 25 25 H 1.09003 * 109.46890 * 60.00160 * 13 12 11 26 26 H 0.96700 * 114.00007 * 180.02562 * 14 13 12 27 27 H 1.08010 * 120.00089 * 359.97438 * 16 15 9 28 28 H 1.08004 * 120.00173 * 180.27328 * 17 16 15 29 29 H 1.07996 * 120.00217 * 179.83776 * 18 17 16 30 30 H 1.08000 * 119.99751 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.00534 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0798 -1.1966 0.1012 9 6 1.2576 -2.4954 -0.1393 10 1 0.3614 -2.3374 -0.7393 11 16 2.3217 -3.7191 -0.9524 12 6 2.5573 -3.0183 -2.6089 13 6 3.4491 -3.9482 -3.4339 14 8 3.6342 -3.3965 -4.7390 15 6 0.8656 -2.9989 1.2260 16 6 1.8394 -3.2640 2.1707 17 6 1.4796 -3.7216 3.4245 18 6 0.1466 -3.9227 3.7307 19 6 -0.8267 -3.6626 2.7842 20 6 -0.4673 -3.2009 1.5319 21 1 -0.4850 -0.8371 -0.0701 22 1 1.5898 -2.9124 -3.0996 23 1 3.0313 -2.0403 -2.5257 24 1 4.4166 -4.0537 -2.9431 25 1 2.9754 -4.9264 -3.5172 26 1 4.1906 -3.9349 -5.3184 27 1 2.8811 -3.1107 1.9302 28 1 2.2401 -3.9246 4.1641 29 1 -0.1343 -4.2828 4.7093 30 1 -1.8681 -3.8201 3.0232 31 1 -1.2276 -2.9980 0.7923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055022742.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:55 Heat of formation + Delta-G solvation = -61.952818 kcal Electronic energy + Delta-G solvation = -14417.946963 eV Core-core repulsion = 11981.977733 eV Total energy + Delta-G solvation = -2435.969230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = -0.08 seconds Orbital eigenvalues (eV) -40.03786 -37.97882 -36.01156 -32.73084 -31.94580 -31.69614 -28.77134 -25.39859 -23.97849 -23.31265 -22.09651 -19.13943 -18.70492 -17.65571 -16.91913 -16.48540 -16.18790 -15.73339 -15.65418 -15.19581 -14.85811 -14.49336 -14.12476 -13.88881 -13.55539 -13.20236 -12.72679 -12.68171 -12.47919 -12.00246 -11.90481 -11.89836 -11.19977 -11.02845 -10.82968 -10.63948 -9.72888 -9.40095 -8.89870 -8.37330 -6.44411 0.39026 0.59665 1.08032 1.48706 1.55747 1.73312 1.85777 2.48201 3.06576 3.12587 3.50583 3.87308 4.04952 4.05220 4.15601 4.26586 4.35139 4.39298 4.52381 4.69493 4.77627 4.83835 4.84342 5.17404 5.26015 5.62937 5.66691 5.67894 5.93218 6.07413 6.23404 6.45030 6.84237 7.29356 8.65259 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.010303 C = 0.007082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.191373 B = 2716.957934 C = 3952.998318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.016 4.016 3 Si 1.110 2.890 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.282 1.282 7 C -0.587 4.587 8 H 0.056 0.944 9 C 0.121 3.879 10 H 0.025 0.975 11 S -0.296 6.296 12 C -0.072 4.072 13 C 0.108 3.892 14 O -0.587 6.587 15 C -0.051 4.051 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.134 4.134 19 C -0.122 4.122 20 C -0.142 4.142 21 H 0.262 0.738 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.403 0.597 27 H 0.108 0.892 28 H 0.145 0.855 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -8.163 0.664 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.932 3.068 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.208 1.208 7 C -0.627 4.627 8 H 0.074 0.926 9 C -0.006 4.006 10 H 0.043 0.957 11 S -0.065 6.065 12 C -0.221 4.221 13 C 0.029 3.971 14 O -0.397 6.397 15 C -0.054 4.054 16 C -0.137 4.137 17 C -0.142 4.142 18 C -0.153 4.153 19 C -0.140 4.140 20 C -0.162 4.162 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.254 0.746 27 H 0.127 0.873 28 H 0.163 0.837 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.898 -7.069 1.290 8.175 hybrid contribution -0.239 -0.680 -1.011 1.242 sum 3.659 -7.749 0.279 8.574 Atomic orbital electron populations 1.70868 1.07709 1.30863 1.46142 1.27183 0.96496 1.05893 0.92245 0.83003 0.74370 0.71586 0.77811 1.19912 1.19600 1.20754 1.22143 0.94671 0.90876 1.55013 0.92619 1.19737 0.94651 0.94193 0.92059 0.95653 1.85692 1.70526 1.36787 1.13477 1.22937 1.02625 1.02388 0.94138 1.21649 0.98118 0.94491 0.82846 1.86434 1.75051 1.53581 1.24656 1.20030 0.93920 0.95340 0.96135 1.20992 0.98891 0.99776 0.94064 1.21413 0.97494 0.99435 0.95893 1.21391 0.92446 1.01194 1.00234 1.21333 1.00715 0.99238 0.92715 1.21078 0.95051 1.01661 0.98366 0.92674 0.91836 0.91331 0.91870 0.91614 0.74610 0.87347 0.83691 0.82872 0.83901 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.35 13.63 21.45 0.29 -54.06 16 2 C -0.02 -0.87 5.45 84.65 0.46 -0.41 16 3 Si 1.11 49.69 29.91 68.60 2.05 51.75 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.59 -31.96 7.56 25.60 0.19 -31.76 16 8 H 0.06 3.08 7.82 -2.91 -0.02 3.05 16 9 C 0.12 6.11 2.10 29.10 0.06 6.17 16 10 H 0.03 1.40 6.46 -2.39 -0.02 1.39 16 11 S -0.30 -12.88 20.76 -56.49 -1.17 -14.05 16 12 C -0.07 -2.89 6.10 71.98 0.44 -2.45 16 13 C 0.11 3.23 7.05 71.98 0.51 3.73 16 14 O -0.59 -16.32 13.66 -148.98 -2.03 -18.36 16 15 C -0.05 -2.40 4.76 -19.86 -0.09 -2.50 16 16 C -0.12 -5.01 8.89 22.27 0.20 -4.81 16 17 C -0.12 -4.25 10.05 22.27 0.22 -4.03 16 18 C -0.13 -4.18 10.05 22.27 0.22 -3.95 16 19 C -0.12 -4.22 10.05 22.27 0.22 -4.00 16 20 C -0.14 -6.07 9.48 22.27 0.21 -5.86 16 21 H 0.26 15.57 6.48 -92.71 -0.60 14.97 16 22 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 23 H 0.07 3.04 8.00 -2.39 -0.02 3.02 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.40 6.22 9.12 -74.06 -0.68 5.55 16 27 H 0.11 4.73 8.05 -2.91 -0.02 4.70 16 28 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 29 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 30 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.10 4.42 7.95 -2.91 -0.02 4.39 16 Total: -1.00 -66.04 283.27 2.40 -63.64 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.61 Total: 20.94 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 2.65 Total: -49.87 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.29 Total: -54.06 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -2.03 Total: -18.36 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.75 kcal Atomic # 16 Polarization: -12.88 SS G_CDS: -1.17 Total: -14.05 kcal Total: -66.04 2.40 -63.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055022742.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.687 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.08 seconds