Wall clock time and date at job start Mon Mar 30 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00266 * 2 1 4 4 H 1.48498 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47075 * 300.00614 * 3 2 1 6 6 H 1.48505 * 109.46806 * 60.00318 * 3 2 1 7 7 C 1.37879 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00403 * 186.76905 * 7 2 1 9 9 C 1.50702 * 119.99739 * 6.77363 * 7 2 1 10 10 H 1.08995 * 109.47135 * 329.18892 * 9 7 2 11 11 S 1.81398 * 109.46801 * 209.19412 * 9 7 2 12 12 C 1.81403 * 103.00203 * 64.99997 * 11 9 7 13 13 C 1.53002 * 109.47525 * 180.02562 * 12 11 9 14 14 O 1.42896 * 109.47107 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47272 * 89.19326 * 9 7 2 16 16 C 1.38236 * 120.00148 * 61.13834 * 15 9 7 17 17 C 1.38231 * 119.99835 * 179.81100 * 16 15 9 18 18 C 1.38232 * 120.00415 * 0.38751 * 17 16 15 19 19 C 1.38239 * 119.99820 * 359.85936 * 18 17 16 20 20 C 1.38230 * 119.99954 * 359.95503 * 19 18 17 21 21 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47173 * 59.99516 * 12 11 9 23 23 H 1.09006 * 109.46624 * 299.99707 * 12 11 9 24 24 H 1.08998 * 109.46980 * 299.99789 * 13 12 11 25 25 H 1.09005 * 109.47020 * 59.99324 * 13 12 11 26 26 H 0.96698 * 113.99770 * 180.02562 * 14 13 12 27 27 H 1.07998 * 119.99551 * 359.97438 * 16 15 9 28 28 H 1.08010 * 119.99738 * 180.22506 * 17 16 15 29 29 H 1.08000 * 120.00308 * 179.83831 * 18 17 16 30 30 H 1.08000 * 119.99799 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00280 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0789 -1.1974 0.1097 9 6 1.2589 -2.4945 -0.1551 10 1 0.2637 -2.3965 0.2785 11 16 2.1630 -3.8150 0.6990 12 6 2.0729 -3.3116 2.4395 13 6 2.8025 -4.3398 3.3063 14 8 2.7320 -3.9429 4.6772 15 6 1.1382 -2.8336 -1.6184 16 6 2.2759 -3.0313 -2.3782 17 6 2.1650 -3.3462 -3.7196 18 6 0.9167 -3.4554 -4.3031 19 6 -0.2210 -3.2527 -3.5445 20 6 -0.1103 -2.9416 -2.2022 21 1 -0.4850 0.8401 0.0004 22 1 1.0289 -3.2521 2.7469 23 1 2.5435 -2.3358 2.5603 24 1 2.3324 -5.3158 3.1856 25 1 3.8466 -4.3990 2.9987 26 1 3.1751 -4.5499 5.2857 27 1 3.2513 -2.9424 -1.9232 28 1 3.0539 -3.5043 -4.3125 29 1 0.8301 -3.6989 -5.3518 30 1 -1.1963 -3.3376 -4.0005 31 1 -0.9991 -2.7827 -1.6095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055022743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:57 Heat of formation + Delta-G solvation = -41.030651 kcal Electronic energy + Delta-G solvation = -14368.347636 eV Core-core repulsion = 11933.285660 eV Total energy + Delta-G solvation = -2435.061977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.33601 -36.70842 -33.73194 -31.13302 -30.41282 -30.05901 -27.22031 -23.49601 -22.48058 -21.69935 -20.29672 -17.41419 -16.67175 -15.99831 -15.25011 -15.05070 -14.58833 -14.20633 -13.94767 -13.68117 -12.86818 -12.65704 -12.25387 -12.16292 -11.77286 -11.59600 -11.13973 -11.08602 -10.94900 -10.39645 -10.29609 -10.24520 -9.77684 -9.59569 -8.83963 -8.71100 -8.09413 -7.71004 -6.77603 -6.20811 -4.31781 2.09254 2.23881 2.79995 3.19041 3.27895 3.31818 3.77334 4.26395 4.71967 4.81110 5.07814 5.38595 5.44612 5.62007 5.69800 5.78002 5.80057 6.11703 6.24711 6.36812 6.44855 6.54516 6.75274 6.84788 7.07683 7.25709 7.32386 7.63078 7.69464 7.77264 7.81316 7.95952 8.72017 9.29253 10.77981 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.010279 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.314454 B = 2723.332965 C = 3949.513048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.134 3.866 10 H 0.079 0.921 11 S -0.326 6.326 12 C -0.069 4.069 13 C 0.095 3.905 14 O -0.573 6.573 15 C -0.015 4.015 16 C -0.102 4.102 17 C -0.132 4.132 18 C -0.147 4.147 19 C -0.129 4.129 20 C -0.108 4.108 21 H 0.267 0.733 22 H 0.076 0.924 23 H 0.090 0.910 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.375 0.625 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -6.630 -0.214 7.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.089 0.911 9 C 0.008 3.992 10 H 0.097 0.903 11 S -0.095 6.095 12 C -0.217 4.217 13 C 0.016 3.984 14 O -0.378 6.378 15 C -0.018 4.018 16 C -0.121 4.121 17 C -0.150 4.150 18 C -0.165 4.165 19 C -0.147 4.147 20 C -0.128 4.128 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.221 0.779 27 H 0.137 0.863 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.627 -6.953 -0.831 7.479 hybrid contribution 0.085 1.681 0.587 1.782 sum 2.712 -5.272 -0.244 5.934 Atomic orbital electron populations 1.69906 1.06130 1.27463 1.47675 1.25060 0.94950 0.99562 0.93755 0.86427 0.80428 0.82909 0.77826 1.19262 1.20619 1.20743 1.21227 0.94062 0.88842 1.50821 0.91100 1.19879 0.98767 0.91530 0.89052 0.90272 1.85934 1.78715 1.41080 1.03759 1.22837 1.03469 1.01978 0.93450 1.21878 0.99201 0.96486 0.80817 1.86506 1.80396 1.53582 1.17365 1.20023 0.92382 0.92897 0.96546 1.20993 0.98905 0.98966 0.93282 1.20982 0.96806 1.01949 0.95273 1.20855 0.92989 1.03822 0.98868 1.20958 0.97697 1.01639 0.94432 1.21003 0.97437 0.99647 0.94670 0.92345 0.90490 0.89141 0.93357 0.93156 0.77868 0.86273 0.87309 0.87496 0.87280 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.95 12.85 55.43 0.71 -23.23 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.28 7.60 -34.44 -0.26 -13.54 16 8 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 9 C 0.13 3.26 2.48 -29.04 -0.07 3.18 16 10 H 0.08 2.11 7.12 -51.93 -0.37 1.74 16 11 S -0.33 -6.97 20.70 -107.50 -2.23 -9.20 16 12 C -0.07 -1.37 6.10 37.16 0.23 -1.14 16 13 C 0.09 1.50 7.05 37.16 0.26 1.76 16 14 O -0.57 -8.55 13.66 -35.23 -0.48 -9.03 16 15 C -0.02 -0.35 4.77 -104.62 -0.50 -0.85 16 16 C -0.10 -2.16 8.88 -39.58 -0.35 -2.52 16 17 C -0.13 -2.43 10.05 -39.59 -0.40 -2.82 16 18 C -0.15 -2.56 10.05 -39.58 -0.40 -2.96 16 19 C -0.13 -2.39 10.05 -39.58 -0.40 -2.78 16 20 C -0.11 -2.31 9.67 -39.58 -0.38 -2.69 16 21 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 22 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 23 H 0.09 1.95 8.00 -51.92 -0.42 1.53 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.38 3.44 9.12 45.56 0.42 3.85 16 27 H 0.12 2.53 8.03 -52.49 -0.42 2.10 16 28 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.12 2.49 7.95 -52.49 -0.42 2.07 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -28.68 285.17 -8.38 -37.06 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.29 Total: 6.90 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.37 Total: -22.52 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.71 Total: -23.23 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.48 Total: -9.03 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -6.97 SS G_CDS: -2.23 Total: -9.20 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.68 -8.38 -37.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055022743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.969 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds