Wall clock time and date at job start Mon Mar 30 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00266 * 2 1 4 4 H 1.48498 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47075 * 300.00614 * 3 2 1 6 6 H 1.48505 * 109.46806 * 60.00318 * 3 2 1 7 7 C 1.37879 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00403 * 186.76905 * 7 2 1 9 9 C 1.50702 * 119.99739 * 6.77363 * 7 2 1 10 10 H 1.08995 * 109.47135 * 329.18892 * 9 7 2 11 11 S 1.81398 * 109.46801 * 209.19412 * 9 7 2 12 12 C 1.81403 * 103.00203 * 64.99997 * 11 9 7 13 13 C 1.53002 * 109.47525 * 180.02562 * 12 11 9 14 14 O 1.42896 * 109.47107 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47272 * 89.19326 * 9 7 2 16 16 C 1.38236 * 120.00148 * 61.13834 * 15 9 7 17 17 C 1.38231 * 119.99835 * 179.81100 * 16 15 9 18 18 C 1.38232 * 120.00415 * 0.38751 * 17 16 15 19 19 C 1.38239 * 119.99820 * 359.85936 * 18 17 16 20 20 C 1.38230 * 119.99954 * 359.95503 * 19 18 17 21 21 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47173 * 59.99516 * 12 11 9 23 23 H 1.09006 * 109.46624 * 299.99707 * 12 11 9 24 24 H 1.08998 * 109.46980 * 299.99789 * 13 12 11 25 25 H 1.09005 * 109.47020 * 59.99324 * 13 12 11 26 26 H 0.96698 * 113.99770 * 180.02562 * 14 13 12 27 27 H 1.07998 * 119.99551 * 359.97438 * 16 15 9 28 28 H 1.08010 * 119.99738 * 180.22506 * 17 16 15 29 29 H 1.08000 * 120.00308 * 179.83831 * 18 17 16 30 30 H 1.08000 * 119.99799 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00280 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0789 -1.1974 0.1097 9 6 1.2589 -2.4945 -0.1551 10 1 0.2637 -2.3965 0.2785 11 16 2.1630 -3.8150 0.6990 12 6 2.0729 -3.3116 2.4395 13 6 2.8025 -4.3398 3.3063 14 8 2.7320 -3.9429 4.6772 15 6 1.1382 -2.8336 -1.6184 16 6 2.2759 -3.0313 -2.3782 17 6 2.1650 -3.3462 -3.7196 18 6 0.9167 -3.4554 -4.3031 19 6 -0.2210 -3.2527 -3.5445 20 6 -0.1103 -2.9416 -2.2022 21 1 -0.4850 0.8401 0.0004 22 1 1.0289 -3.2521 2.7469 23 1 2.5435 -2.3358 2.5603 24 1 2.3324 -5.3158 3.1856 25 1 3.8466 -4.3990 2.9987 26 1 3.1751 -4.5499 5.2857 27 1 3.2513 -2.9424 -1.9232 28 1 3.0539 -3.5043 -4.3125 29 1 0.8301 -3.6989 -5.3518 30 1 -1.1963 -3.3376 -4.0005 31 1 -0.9991 -2.7827 -1.6095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055022743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:57 Heat of formation + Delta-G solvation = -58.525418 kcal Electronic energy + Delta-G solvation = -14369.106266 eV Core-core repulsion = 11933.285660 eV Total energy + Delta-G solvation = -2435.820607 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88804 -37.92880 -35.62006 -32.89906 -31.88213 -31.58198 -29.01610 -25.38231 -23.89994 -23.23841 -21.90598 -18.65795 -18.63556 -17.52043 -17.07190 -16.44108 -16.23151 -15.86073 -15.50699 -15.14632 -14.60295 -14.22353 -13.87547 -13.77289 -13.45953 -13.29715 -12.90656 -12.68767 -12.51333 -12.16270 -12.00655 -11.78385 -11.43036 -10.98298 -10.73854 -10.63782 -9.62511 -9.31343 -8.60567 -8.13813 -6.37508 0.51444 0.69714 1.18356 1.34608 1.37405 1.48344 1.98099 2.34824 3.05521 3.20486 3.57227 3.95370 4.11330 4.20202 4.26995 4.37509 4.45680 4.48753 4.76617 4.80233 4.90355 4.92904 5.03126 5.29873 5.38280 5.58838 5.75222 5.77883 5.88007 6.10552 6.34114 6.68006 6.88471 7.25554 8.78220 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.010279 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.314454 B = 2723.332965 C = 3949.513048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.028 3.972 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.134 3.866 10 H 0.042 0.958 11 S -0.308 6.308 12 C -0.069 4.069 13 C 0.107 3.893 14 O -0.588 6.588 15 C -0.044 4.044 16 C -0.121 4.121 17 C -0.127 4.127 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.132 4.132 21 H 0.267 0.733 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.402 0.598 27 H 0.110 0.890 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -7.486 -1.602 8.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.175 4.175 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.006 3.994 10 H 0.060 0.940 11 S -0.077 6.077 12 C -0.218 4.218 13 C 0.028 3.972 14 O -0.398 6.398 15 C -0.047 4.047 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.155 4.155 19 C -0.144 4.144 20 C -0.152 4.152 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.253 0.747 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.662 -7.829 -2.201 8.919 hybrid contribution -0.236 1.841 1.021 2.118 sum 3.427 -5.988 -1.179 6.999 Atomic orbital electron populations 1.70018 1.07268 1.27955 1.49201 1.25743 0.95646 1.02386 0.93727 0.85557 0.79397 0.79414 0.77793 1.18811 1.20341 1.20419 1.21330 0.93575 0.90016 1.50757 0.92063 1.19701 0.96814 0.92112 0.90738 0.93978 1.85676 1.77925 1.39518 1.04548 1.22896 1.03058 1.02419 0.93413 1.21676 0.99306 0.95342 0.80837 1.86437 1.81121 1.55027 1.17220 1.19993 0.93768 0.95242 0.95724 1.21030 0.97819 1.00359 0.94805 1.21380 0.98823 1.00107 0.94134 1.21352 0.91895 1.01496 1.00729 1.21320 0.99916 1.00072 0.93078 1.21061 0.96452 1.01351 0.96337 0.92412 0.91938 0.91442 0.91657 0.91883 0.74713 0.87156 0.83852 0.83149 0.84216 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.49 12.85 21.45 0.28 -51.21 16 2 C 0.03 1.53 5.45 84.66 0.46 1.99 16 3 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.52 -27.88 7.60 25.60 0.19 -27.69 16 8 H 0.06 3.34 7.82 -2.91 -0.02 3.32 16 9 C 0.13 6.77 2.48 29.10 0.07 6.84 16 10 H 0.04 2.39 7.12 -2.39 -0.02 2.38 16 11 S -0.31 -13.42 20.70 -56.49 -1.17 -14.59 16 12 C -0.07 -2.80 6.10 71.98 0.44 -2.36 16 13 C 0.11 3.25 7.05 71.98 0.51 3.76 16 14 O -0.59 -16.62 13.66 -148.98 -2.03 -18.66 16 15 C -0.04 -2.07 4.77 -19.87 -0.09 -2.17 16 16 C -0.12 -5.06 8.88 22.27 0.20 -4.86 16 17 C -0.13 -4.28 10.05 22.27 0.22 -4.06 16 18 C -0.14 -4.24 10.05 22.27 0.22 -4.02 16 19 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 20 C -0.13 -5.74 9.67 22.27 0.22 -5.52 16 21 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 22 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 23 H 0.07 3.01 8.00 -2.39 -0.02 2.99 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.40 6.39 9.12 -74.06 -0.68 5.71 16 27 H 0.11 4.70 8.03 -2.91 -0.02 4.68 16 28 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 29 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 30 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 31 H 0.10 4.53 7.95 -2.91 -0.02 4.51 16 Total: -1.00 -63.56 285.17 2.20 -61.36 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.44 Total: 20.06 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 2.66 Total: -42.26 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.28 Total: -51.21 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -2.03 Total: -18.66 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -13.42 SS G_CDS: -1.17 Total: -14.59 kcal Total: -63.56 2.20 -61.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055022743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.831 kcal (2) G-P(sol) polarization free energy of solvation -63.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds