Wall clock time and date at job start Mon Mar 30 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99667 * 2 1 4 4 H 1.48504 * 109.47063 * 270.00076 * 3 2 1 5 5 H 1.48497 * 109.47255 * 29.99706 * 3 2 1 6 6 H 1.48502 * 109.47140 * 149.99709 * 3 2 1 7 7 C 1.37878 * 120.00559 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00384 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99690 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.64908 * 56.84012 * 9 7 2 11 11 C 1.54446 * 110.72875 * 180.02562 * 9 7 2 12 12 O 1.43883 * 105.08529 * 140.32849 * 11 9 7 13 13 C 1.43786 * 107.10526 * 1.71225 * 12 11 9 14 14 H 1.09002 * 110.11605 * 94.08987 * 13 12 11 15 15 C 1.50706 * 110.11520 * 215.67680 * 13 12 11 16 16 C 1.38212 * 120.01455 * 102.42530 * 15 13 12 17 17 C 1.38226 * 120.02500 * 179.72148 * 16 15 13 18 18 C 1.38270 * 120.04658 * 0.55312 * 17 16 15 19 19 C 1.38177 * 120.02856 * 359.72498 * 18 17 16 20 20 C 1.38442 * 120.00591 * 282.69976 * 15 13 12 21 21 F 1.35101 * 120.03126 * 0.02562 * 20 15 13 22 22 O 1.44388 * 106.22110 * 334.88213 * 13 12 11 23 23 H 0.96998 * 120.00034 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.31771 * 21.42537 * 11 9 7 25 25 H 1.09000 * 110.32071 * 259.23443 * 11 9 7 26 26 H 1.07998 * 119.98910 * 359.97438 * 16 15 13 27 27 H 1.07994 * 119.97392 * 180.27675 * 17 16 15 28 28 H 1.07997 * 119.98560 * 179.74331 * 18 17 16 29 29 H 1.07997 * 120.00893 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.5755 -2.5537 -0.8519 11 6 2.2289 -3.6948 0.0028 12 8 1.6382 -4.6608 0.8905 13 6 0.3916 -4.1086 1.3473 14 1 -0.4262 -4.4565 0.7162 15 6 0.1439 -4.5036 2.7804 16 6 0.3663 -3.5937 3.7967 17 6 0.1337 -3.9540 5.1108 18 6 -0.3106 -5.2285 5.4110 19 6 -0.5281 -6.1417 4.3970 20 6 -0.3009 -5.7800 3.0797 21 9 -0.5128 -6.6722 2.0876 22 8 0.5235 -2.6745 1.2433 23 1 -0.4850 0.8400 -0.0004 24 1 3.2051 -3.3851 0.3759 25 1 2.3207 -4.1095 -1.0010 26 1 0.7180 -2.5995 3.5638 27 1 0.3034 -3.2409 5.9039 28 1 -0.4881 -5.5102 6.4383 29 1 -0.8756 -7.1369 4.6318 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057494357.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:14 Heat of formation + Delta-G solvation = -110.131489 kcal Electronic energy + Delta-G solvation = -16761.044519 eV Core-core repulsion = 13756.772929 eV Total energy + Delta-G solvation = -3004.271590 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.61853 -39.47132 -38.20346 -33.94788 -32.82854 -31.52127 -30.27342 -28.76889 -25.22086 -24.20020 -22.46583 -21.29499 -20.78378 -17.57864 -16.93175 -16.35114 -15.91553 -15.72158 -15.21398 -14.78119 -14.60039 -14.16394 -13.94845 -13.59998 -12.90183 -12.71760 -12.44787 -12.13801 -11.69413 -11.61631 -11.20976 -10.98234 -10.85184 -10.58356 -10.16043 -9.49931 -9.05690 -8.81774 -8.75037 -8.50480 -8.45961 -6.20861 -4.36151 1.33621 1.45357 3.21800 3.29025 3.32424 3.77634 4.27612 4.44685 4.57963 4.70106 4.98200 5.11778 5.30711 5.37094 5.59718 5.77221 5.86870 6.03405 6.08661 6.16374 6.27710 6.37690 6.41290 6.64667 6.73030 6.93843 7.11776 7.20764 7.69671 7.98939 8.21652 8.72658 9.36310 10.87118 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.034422 B = 0.007180 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.234031 B = 3898.715410 C = 4375.177121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.070 0.930 9 C 0.179 3.821 10 H 0.045 0.955 11 C 0.025 3.975 12 O -0.397 6.397 13 C 0.260 3.740 14 H 0.067 0.933 15 C -0.116 4.116 16 C -0.050 4.050 17 C -0.140 4.140 18 C -0.093 4.093 19 C -0.167 4.167 20 C 0.115 3.885 21 F -0.138 7.138 22 O -0.352 6.352 23 H 0.265 0.735 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.148 0.852 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -7.927 7.485 10.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.125 3.875 10 H 0.063 0.937 11 C -0.052 4.052 12 O -0.319 6.319 13 C 0.164 3.836 14 H 0.084 0.916 15 C -0.117 4.117 16 C -0.068 4.068 17 C -0.158 4.158 18 C -0.111 4.111 19 C -0.186 4.186 20 C 0.096 3.904 21 F -0.116 7.116 22 O -0.273 6.273 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.165 0.835 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.889 -7.880 7.643 11.013 hybrid contribution 0.268 0.698 -0.367 0.832 sum -0.621 -7.182 7.276 10.243 Atomic orbital electron populations 1.70018 1.06190 1.27247 1.46326 1.25107 0.94866 0.99700 0.93191 0.86472 0.79936 0.82564 0.78332 1.20293 1.20907 1.19513 1.20899 0.92874 0.89057 1.54216 0.91212 1.21404 0.88437 0.93517 0.84178 0.93747 1.24158 0.98884 0.89651 0.92489 1.88792 1.35638 1.42794 1.64628 1.22519 0.87832 0.83763 0.89511 0.91607 1.19953 1.02271 0.92927 0.96567 1.21164 0.94392 1.00236 0.90971 1.21244 1.01236 0.96635 0.96686 1.20974 0.98229 0.93254 0.98673 1.21005 1.05375 1.01264 0.90926 1.17535 1.00880 0.86858 0.85176 1.91480 1.92422 1.66953 1.60747 1.89781 1.76806 1.15961 1.44705 0.92481 0.90779 0.91778 0.83455 0.85375 0.85373 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.74 13.16 55.43 0.73 -24.02 15 2 C 0.08 2.14 5.45 -17.82 -0.10 2.04 15 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.53 -14.49 8.81 -34.44 -0.30 -14.79 15 8 H 0.07 1.82 7.55 -52.49 -0.40 1.42 15 9 C 0.18 4.62 3.16 -27.12 -0.09 4.53 15 10 H 0.04 1.20 8.14 -51.93 -0.42 0.78 15 11 C 0.02 0.54 7.65 37.92 0.29 0.83 15 12 O -0.40 -9.00 11.25 -59.28 -0.67 -9.67 15 13 C 0.26 5.83 3.80 36.01 0.14 5.96 15 14 H 0.07 1.46 8.08 -51.93 -0.42 1.04 15 15 C -0.12 -2.28 5.53 -104.55 -0.58 -2.86 15 16 C -0.05 -0.90 9.38 -39.60 -0.37 -1.27 15 17 C -0.14 -1.98 10.05 -39.57 -0.40 -2.38 15 18 C -0.09 -1.17 10.04 -39.59 -0.40 -1.57 15 19 C -0.17 -2.33 10.03 -39.51 -0.40 -2.72 15 20 C 0.11 2.01 7.25 -39.42 -0.29 1.72 15 21 F -0.14 -2.47 16.76 2.25 0.04 -2.43 15 22 O -0.35 -9.11 9.72 -59.28 -0.58 -9.68 15 23 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 24 H 0.07 1.60 7.67 -51.93 -0.40 1.20 15 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.15 2.91 7.15 -52.49 -0.38 2.53 15 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 LS Contribution 262.09 15.07 3.95 3.95 Total: -1.00 -29.99 262.09 -6.87 -36.86 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -2.84 Total: -0.08 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.49 Total: -10.51 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.73 Total: -24.02 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.24 Total: -19.35 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.99 -6.87 -36.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057494357.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.270 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds