Wall clock time and date at job start Mon Mar 30 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99667 * 2 1 4 4 H 1.48504 * 109.47063 * 270.00076 * 3 2 1 5 5 H 1.48497 * 109.47255 * 29.99706 * 3 2 1 6 6 H 1.48502 * 109.47140 * 149.99709 * 3 2 1 7 7 C 1.37878 * 120.00559 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00384 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99690 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.64908 * 56.84012 * 9 7 2 11 11 C 1.54446 * 110.72875 * 180.02562 * 9 7 2 12 12 O 1.43883 * 105.08529 * 140.32849 * 11 9 7 13 13 C 1.43786 * 107.10526 * 1.71225 * 12 11 9 14 14 H 1.09002 * 110.11605 * 94.08987 * 13 12 11 15 15 C 1.50706 * 110.11520 * 215.67680 * 13 12 11 16 16 C 1.38212 * 120.01455 * 102.42530 * 15 13 12 17 17 C 1.38226 * 120.02500 * 179.72148 * 16 15 13 18 18 C 1.38270 * 120.04658 * 0.55312 * 17 16 15 19 19 C 1.38177 * 120.02856 * 359.72498 * 18 17 16 20 20 C 1.38442 * 120.00591 * 282.69976 * 15 13 12 21 21 F 1.35101 * 120.03126 * 0.02562 * 20 15 13 22 22 O 1.44388 * 106.22110 * 334.88213 * 13 12 11 23 23 H 0.96998 * 120.00034 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.31771 * 21.42537 * 11 9 7 25 25 H 1.09000 * 110.32071 * 259.23443 * 11 9 7 26 26 H 1.07998 * 119.98910 * 359.97438 * 16 15 13 27 27 H 1.07994 * 119.97392 * 180.27675 * 17 16 15 28 28 H 1.07997 * 119.98560 * 179.74331 * 18 17 16 29 29 H 1.07997 * 120.00893 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.5755 -2.5537 -0.8519 11 6 2.2289 -3.6948 0.0028 12 8 1.6382 -4.6608 0.8905 13 6 0.3916 -4.1086 1.3473 14 1 -0.4262 -4.4565 0.7162 15 6 0.1439 -4.5036 2.7804 16 6 0.3663 -3.5937 3.7967 17 6 0.1337 -3.9540 5.1108 18 6 -0.3106 -5.2285 5.4110 19 6 -0.5281 -6.1417 4.3970 20 6 -0.3009 -5.7800 3.0797 21 9 -0.5128 -6.6722 2.0876 22 8 0.5235 -2.6745 1.2433 23 1 -0.4850 0.8400 -0.0004 24 1 3.2051 -3.3851 0.3759 25 1 2.3207 -4.1095 -1.0010 26 1 0.7180 -2.5995 3.5638 27 1 0.3034 -3.2409 5.9039 28 1 -0.4881 -5.5102 6.4383 29 1 -0.8756 -7.1369 4.6318 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057494357.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:14 Heat of formation + Delta-G solvation = -128.772466 kcal Electronic energy + Delta-G solvation = -16761.852853 eV Core-core repulsion = 13756.772929 eV Total energy + Delta-G solvation = -3005.079923 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.95922 -41.18929 -39.56872 -35.87797 -34.79386 -33.03531 -31.49478 -30.58694 -27.09040 -25.89530 -23.79023 -23.03520 -22.33303 -19.29979 -18.47731 -18.04234 -17.47243 -17.28251 -16.63337 -16.47511 -16.35986 -15.89209 -15.52052 -14.99538 -14.43764 -14.27644 -14.10720 -13.79850 -13.23340 -13.21199 -12.81136 -12.72598 -12.46159 -12.19675 -12.00680 -11.42309 -10.98137 -10.72897 -10.51545 -10.01749 -9.70531 -8.28747 -6.52403 0.08521 0.23851 1.41237 1.42611 1.54314 2.34723 2.50755 2.83977 2.92932 3.23229 3.33267 3.81197 3.89240 4.07859 4.12662 4.16969 4.32854 4.39049 4.50348 4.58548 4.87920 5.01985 5.11321 5.13607 5.20920 5.41460 5.48415 5.58811 5.92089 5.94787 6.29286 6.64205 7.24890 8.80608 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.034422 B = 0.007180 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.234031 B = 3898.715410 C = 4375.177121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.026 3.974 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.170 3.830 10 H 0.018 0.982 11 C 0.033 3.967 12 O -0.402 6.402 13 C 0.258 3.742 14 H 0.057 0.943 15 C -0.150 4.150 16 C -0.074 4.074 17 C -0.129 4.129 18 C -0.072 4.072 19 C -0.153 4.153 20 C 0.094 3.906 21 F -0.147 7.147 22 O -0.375 6.375 23 H 0.268 0.732 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.117 0.883 27 H 0.160 0.840 28 H 0.181 0.819 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 -8.514 9.829 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.115 3.885 10 H 0.036 0.964 11 C -0.043 4.043 12 O -0.324 6.324 13 C 0.162 3.838 14 H 0.074 0.926 15 C -0.151 4.151 16 C -0.093 4.093 17 C -0.147 4.147 18 C -0.090 4.090 19 C -0.171 4.171 20 C 0.074 3.926 21 F -0.126 7.126 22 O -0.296 6.296 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.135 0.865 27 H 0.178 0.822 28 H 0.198 0.802 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.387 -8.483 9.982 13.105 hybrid contribution 0.064 0.793 -1.030 1.301 sum -0.323 -7.690 8.952 11.806 Atomic orbital electron populations 1.70154 1.07969 1.28282 1.47502 1.26040 0.95684 1.03565 0.92464 0.85325 0.78573 0.77547 0.78806 1.19143 1.20664 1.18628 1.21274 0.93419 0.90019 1.54335 0.90524 1.21349 0.88745 0.94893 0.83491 0.96412 1.24109 0.98014 0.88404 0.93822 1.88765 1.35904 1.42900 1.64826 1.22593 0.87249 0.82008 0.91934 0.92568 1.19857 1.05493 0.94842 0.94921 1.21054 0.96440 0.98926 0.92850 1.21599 0.99538 0.98235 0.95319 1.21554 0.95084 0.91626 1.00715 1.21476 1.03354 1.03119 0.89183 1.17813 1.02101 0.86037 0.86603 1.91449 1.92640 1.66990 1.61530 1.89722 1.77114 1.18345 1.44373 0.92342 0.90176 0.89337 0.86462 0.82231 0.80207 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.48 13.16 21.45 0.28 -53.20 15 2 C 0.03 1.42 5.45 84.65 0.46 1.88 15 3 Si 0.97 42.63 29.54 68.60 2.03 44.65 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 6 H -0.26 -11.01 7.11 99.48 0.71 -10.31 15 7 C -0.55 -30.84 8.81 25.60 0.23 -30.62 15 8 H 0.08 4.04 7.55 -2.91 -0.02 4.02 15 9 C 0.17 9.16 3.16 30.34 0.10 9.26 15 10 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 11 C 0.03 1.48 7.65 72.47 0.55 2.03 15 12 O -0.40 -18.78 11.25 -125.99 -1.42 -20.19 15 13 C 0.26 12.15 3.80 71.24 0.27 12.42 15 14 H 0.06 2.68 8.08 -2.39 -0.02 2.66 15 15 C -0.15 -6.03 5.53 -19.82 -0.11 -6.14 15 16 C -0.07 -2.72 9.38 22.26 0.21 -2.51 15 17 C -0.13 -3.29 10.05 22.27 0.22 -3.06 15 18 C -0.07 -1.46 10.04 22.26 0.22 -1.24 15 19 C -0.15 -3.70 10.03 22.31 0.22 -3.48 15 20 C 0.09 3.20 7.25 22.38 0.16 3.36 15 21 F -0.15 -5.30 16.76 44.97 0.75 -4.54 15 22 O -0.37 -20.48 9.72 -125.99 -1.22 -21.71 15 23 H 0.27 14.84 8.31 -92.71 -0.77 14.07 15 24 H 0.08 3.50 7.67 -2.39 -0.02 3.49 15 25 H 0.09 3.52 8.14 -2.39 -0.02 3.50 15 26 H 0.12 4.91 7.15 -2.91 -0.02 4.88 15 27 H 0.16 3.01 8.06 -2.91 -0.02 2.99 15 28 H 0.18 1.91 8.06 -2.91 -0.02 1.88 15 29 H 0.17 2.86 8.06 -2.91 -0.02 2.84 15 Total: -1.00 -67.97 262.09 4.12 -63.85 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.16 Total: 9.23 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 2.54 Total: -18.09 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.28 Total: -53.20 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -2.64 Total: -41.90 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.75 Total: -4.54 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -67.97 4.12 -63.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057494357.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.926 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds