Wall clock time and date at job start Mon Mar 30 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00337 * 2 1 4 4 H 1.48495 * 109.46700 * 269.99982 * 3 2 1 5 5 H 1.48497 * 109.47139 * 29.99757 * 3 2 1 6 6 H 1.48500 * 109.47140 * 149.99831 * 3 2 1 7 7 C 1.37878 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99825 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.28422 * 302.11021 * 9 7 2 11 11 C 1.54454 * 110.31913 * 180.02562 * 9 7 2 12 12 O 1.44839 * 102.90010 * 219.30417 * 11 9 7 13 13 C 1.44380 * 103.22993 * 36.60956 * 12 11 9 14 14 H 1.08998 * 110.11525 * 80.01941 * 13 12 11 15 15 C 1.50706 * 110.11274 * 201.60570 * 13 12 11 16 16 C 1.38217 * 120.01440 * 103.27185 * 15 13 12 17 17 C 1.38220 * 120.02348 * 179.72294 * 16 15 13 18 18 C 1.38268 * 120.05117 * 0.55140 * 17 16 15 19 19 C 1.38175 * 120.02636 * 359.72680 * 18 17 16 20 20 C 1.38438 * 120.01032 * 283.54486 * 15 13 12 21 21 F 1.35104 * 120.02728 * 359.97438 * 20 15 13 22 22 O 1.43787 * 106.17661 * 320.77917 * 13 12 11 23 23 H 0.97008 * 119.99788 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.72945 * 100.94934 * 11 9 7 25 25 H 1.09004 * 110.88243 * 337.72465 * 11 9 7 26 26 H 1.08004 * 119.98603 * 0.02562 * 16 15 13 27 27 H 1.07996 * 119.97659 * 180.26103 * 17 16 15 28 28 H 1.08004 * 119.98702 * 179.74977 * 18 17 16 29 29 H 1.07998 * 120.01415 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5909 -2.5544 0.8663 11 6 2.2370 -3.6879 0.0018 12 8 1.6033 -4.6347 -0.8925 13 6 1.0159 -3.7901 -1.9055 14 1 1.7751 -3.4850 -2.6257 15 6 -0.0993 -4.5215 -2.6073 16 6 -1.4159 -4.2281 -2.3058 17 6 -2.4389 -4.8948 -2.9534 18 6 -2.1465 -5.8639 -3.8954 19 6 -0.8310 -6.1630 -4.1943 20 6 0.1947 -5.4916 -3.5502 21 9 1.4812 -5.7828 -3.8422 22 8 0.4960 -2.6402 -1.2163 23 1 -0.4850 0.8401 -0.0004 24 1 2.3335 -4.1080 1.0030 25 1 3.2107 -3.3854 -0.3836 26 1 -1.6454 -3.4742 -1.5673 27 1 -3.4673 -4.6620 -2.7203 28 1 -2.9466 -6.3871 -4.3979 29 1 -0.6029 -6.9197 -4.9303 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057494360.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:19 Heat of formation + Delta-G solvation = -127.803475 kcal Electronic energy + Delta-G solvation = -16778.650313 eV Core-core repulsion = 13773.612408 eV Total energy + Delta-G solvation = -3005.037905 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.95404 -41.18490 -39.56394 -35.86736 -34.72504 -33.00996 -31.48376 -30.53985 -27.03752 -25.90674 -23.75680 -22.97804 -22.42450 -18.94062 -18.84226 -17.98519 -17.63672 -17.08911 -16.74789 -16.51560 -16.21271 -16.04988 -15.12532 -15.07645 -14.40109 -14.19274 -14.05142 -13.78938 -13.25977 -13.11923 -12.82577 -12.72769 -12.47774 -12.30984 -12.02614 -11.44047 -11.08039 -10.76815 -10.28642 -9.98136 -9.69533 -8.23752 -6.47746 0.08936 0.24416 1.40036 1.41161 1.52101 2.36002 2.51795 2.87779 2.96092 3.23463 3.33527 3.82899 3.88158 4.12028 4.15540 4.17455 4.31311 4.41089 4.49131 4.60256 4.87550 4.93662 5.10830 5.15835 5.32010 5.43965 5.48522 5.61017 5.92907 5.99463 6.37125 6.72020 7.29884 8.84312 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.035200 B = 0.007065 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.264583 B = 3961.993343 C = 4335.145302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.028 3.972 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.173 3.827 10 H 0.029 0.971 11 C 0.028 3.972 12 O -0.395 6.395 13 C 0.265 3.735 14 H 0.056 0.944 15 C -0.152 4.152 16 C -0.074 4.074 17 C -0.129 4.129 18 C -0.072 4.072 19 C -0.153 4.153 20 C 0.093 3.907 21 F -0.147 7.147 22 O -0.383 6.383 23 H 0.266 0.734 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.118 0.882 27 H 0.160 0.840 28 H 0.180 0.820 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -10.192 -6.885 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.608 4.608 8 H 0.089 0.911 9 C 0.118 3.882 10 H 0.047 0.953 11 C -0.048 4.048 12 O -0.316 6.316 13 C 0.169 3.831 14 H 0.074 0.926 15 C -0.153 4.153 16 C -0.092 4.092 17 C -0.147 4.147 18 C -0.090 4.090 19 C -0.172 4.172 20 C 0.074 3.926 21 F -0.126 7.126 22 O -0.304 6.304 23 H 0.075 0.925 24 H 0.133 0.867 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.177 0.823 28 H 0.198 0.802 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.920 -10.208 -6.932 12.947 hybrid contribution 1.012 1.194 0.263 1.587 sum -2.908 -9.014 -6.668 11.584 Atomic orbital electron populations 1.70148 1.07778 1.27962 1.47683 1.25955 0.95658 1.03235 0.92670 0.85441 0.78917 0.78191 0.78374 1.20211 1.20295 1.18340 1.21630 0.93394 0.91282 1.54465 0.91144 1.21062 0.89155 0.93920 0.84048 0.95304 1.24430 0.96799 0.88472 0.95085 1.89302 1.71922 1.31086 1.39296 1.22558 0.90204 0.80946 0.89393 0.92628 1.19915 0.95895 0.99753 0.99729 1.21057 0.91166 0.98415 0.98552 1.21598 0.99942 0.96442 0.96734 1.21553 0.96111 0.95688 0.95641 1.21474 0.91929 1.01804 1.01964 1.17818 0.79235 0.97628 0.97905 1.91450 1.36399 1.92404 1.92363 1.89108 1.60138 1.44550 1.36619 0.92527 0.86736 0.90973 0.86446 0.82257 0.80225 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.45 13.05 21.45 0.28 -53.17 15 2 C 0.03 1.57 5.43 84.66 0.46 2.03 15 3 Si 0.97 43.27 29.54 68.60 2.03 45.30 15 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 15 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 7 C -0.57 -31.95 8.78 25.60 0.22 -31.72 15 8 H 0.07 3.75 7.55 -2.91 -0.02 3.72 15 9 C 0.17 9.28 3.52 30.34 0.11 9.39 15 10 H 0.03 1.67 8.14 -2.39 -0.02 1.65 15 11 C 0.03 1.25 7.34 72.48 0.53 1.78 15 12 O -0.39 -18.19 11.51 -125.98 -1.45 -19.64 15 13 C 0.26 12.44 3.80 71.24 0.27 12.71 15 14 H 0.06 2.67 8.10 -2.39 -0.02 2.65 15 15 C -0.15 -6.09 5.54 -19.82 -0.11 -6.20 15 16 C -0.07 -2.69 9.38 22.26 0.21 -2.48 15 17 C -0.13 -3.30 10.04 22.27 0.22 -3.07 15 18 C -0.07 -1.47 10.04 22.26 0.22 -1.24 15 19 C -0.15 -3.71 10.03 22.31 0.22 -3.49 15 20 C 0.09 3.19 7.25 22.37 0.16 3.35 15 21 F -0.15 -5.29 16.77 44.97 0.75 -4.54 15 22 O -0.38 -20.89 9.26 -125.98 -1.17 -22.06 15 23 H 0.27 14.81 8.31 -92.70 -0.77 14.04 15 24 H 0.11 4.37 8.14 -2.39 -0.02 4.35 15 25 H 0.07 3.06 7.69 -2.38 -0.02 3.04 15 26 H 0.12 4.93 7.14 -2.91 -0.02 4.91 15 27 H 0.16 3.02 8.06 -2.91 -0.02 3.00 15 28 H 0.18 1.91 8.06 -2.91 -0.02 1.89 15 29 H 0.17 2.86 8.06 -2.91 -0.02 2.84 15 Total: -1.00 -68.25 261.85 4.13 -64.12 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.16 Total: 8.95 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 2.53 Total: -18.95 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.28 Total: -53.17 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -2.62 Total: -41.70 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.75 Total: -4.54 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -68.25 4.13 -64.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057494360.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.682 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds