Wall clock time and date at job start Mon Mar 30 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99893 * 2 1 4 4 H 1.48499 * 109.46926 * 240.00029 * 3 2 1 5 5 H 1.48502 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47447 * 119.99658 * 3 2 1 7 7 C 1.37872 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00383 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.61701 * 298.37977 * 9 7 2 11 11 C 1.54913 * 110.69857 * 175.10834 * 9 7 2 12 12 O 1.44785 * 101.72043 * 206.04397 * 11 9 7 13 13 C 1.43752 * 104.81900 * 36.10403 * 12 11 9 14 14 H 1.08999 * 109.63139 * 95.56049 * 13 12 11 15 15 C 1.50693 * 109.63380 * 215.80935 * 13 12 11 16 16 C 1.38247 * 119.97335 * 119.08450 * 15 13 12 17 17 C 1.38203 * 120.02212 * 179.76742 * 16 15 13 18 18 C 1.38462 * 119.97313 * 0.51258 * 17 16 15 19 19 F 1.35103 * 120.02606 * 179.77191 * 18 17 16 20 20 C 1.38463 * 119.94969 * 359.74085 * 18 17 16 21 21 C 1.38195 * 119.97221 * 0.02562 * 20 18 17 22 22 O 1.43375 * 108.78880 * 335.68545 * 13 12 11 23 23 H 0.96996 * 120.00268 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.97383 * 324.14778 * 11 9 7 25 25 H 1.08996 * 110.98005 * 87.93358 * 11 9 7 26 26 H 1.07993 * 119.98997 * 0.02562 * 16 15 13 27 27 H 1.07999 * 120.01376 * 180.25836 * 17 16 15 28 28 H 1.07995 * 120.01018 * 180.02562 * 20 18 17 29 29 H 1.07998 * 119.98642 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6390 -2.5889 0.8979 11 6 2.2280 -3.6952 -0.1224 12 8 1.3835 -4.7036 -0.7277 13 6 0.5339 -3.9773 -1.6317 14 1 0.9592 -4.0037 -2.6350 15 6 -0.8374 -4.6018 -1.6498 16 6 -1.9385 -3.8616 -1.2612 17 6 -3.1973 -4.4318 -1.2819 18 6 -3.3539 -5.7481 -1.6819 19 9 -4.5834 -6.3080 -1.6982 20 6 -2.2497 -6.4900 -2.0658 21 6 -0.9926 -5.9162 -2.0489 22 8 0.4385 -2.6184 -1.1846 23 1 -0.4850 0.8400 -0.0004 24 1 3.0676 -3.4481 -0.7720 25 1 2.5771 -4.0164 0.8589 26 1 -1.8156 -2.8362 -0.9454 27 1 -4.0579 -3.8522 -0.9823 28 1 -2.3708 -7.5166 -2.3784 29 1 -0.1312 -6.4945 -2.3487 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057494380.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:30 Heat of formation + Delta-G solvation = -110.302774 kcal Electronic energy + Delta-G solvation = -16553.248512 eV Core-core repulsion = 13548.969494 eV Total energy + Delta-G solvation = -3004.279018 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.70438 -39.63045 -38.06580 -34.03909 -32.74618 -31.10619 -30.77060 -28.61287 -25.08933 -23.99418 -22.71131 -21.26430 -20.85289 -17.48304 -16.95997 -16.49413 -16.05145 -15.42222 -15.23980 -15.05472 -14.51355 -14.35613 -13.66389 -13.26658 -13.03138 -12.69105 -12.37513 -12.09063 -11.85831 -11.66799 -11.28861 -10.96469 -10.70071 -10.58662 -10.34957 -9.50578 -9.19802 -8.80878 -8.74655 -8.44790 -8.19925 -6.18556 -4.33761 1.37475 1.54556 3.23864 3.29238 3.30878 3.82888 4.28636 4.47552 4.52470 4.76302 5.05081 5.10805 5.28443 5.59375 5.65920 5.70482 5.96484 6.03404 6.09116 6.20540 6.28794 6.33594 6.41375 6.60529 6.68063 6.94040 7.19414 7.34480 7.70713 8.01585 8.30780 8.76068 9.38775 10.89248 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.038055 B = 0.006449 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.594762 B = 4340.866828 C = 4935.198104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.081 3.919 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.187 3.813 10 H 0.043 0.957 11 C 0.021 3.979 12 O -0.395 6.395 13 C 0.264 3.736 14 H 0.075 0.925 15 C -0.108 4.108 16 C -0.051 4.051 17 C -0.161 4.161 18 C 0.090 3.910 19 F -0.147 7.147 20 C -0.166 4.166 21 C -0.073 4.073 22 O -0.357 6.357 23 H 0.265 0.735 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.155 0.845 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -8.576 -2.880 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.126 4.126 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.132 3.868 10 H 0.061 0.939 11 C -0.055 4.055 12 O -0.316 6.316 13 C 0.167 3.833 14 H 0.092 0.908 15 C -0.109 4.109 16 C -0.069 4.069 17 C -0.180 4.180 18 C 0.071 3.929 19 F -0.126 7.126 20 C -0.185 4.185 21 C -0.091 4.091 22 O -0.278 6.278 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.173 0.827 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.888 -8.547 -2.932 9.486 hybrid contribution 0.264 0.756 -0.023 0.801 sum -2.624 -7.791 -2.955 8.736 Atomic orbital electron populations 1.69991 1.06117 1.27185 1.46262 1.25047 0.94842 0.99490 0.93199 0.86581 0.79660 0.82467 0.78835 1.19954 1.21043 1.19947 1.20942 0.92829 0.89591 1.54718 0.91429 1.21324 0.86993 0.93131 0.85305 0.93907 1.24579 0.94938 0.88277 0.97735 1.89067 1.50733 1.32323 1.59514 1.22446 0.86192 0.81404 0.93244 0.90760 1.20475 0.96270 0.94241 0.99878 1.21259 0.90099 1.01723 0.93848 1.21194 0.99205 0.93667 1.03921 1.17779 0.79740 0.92595 1.02813 1.91457 1.41144 1.85505 1.94492 1.20983 0.91917 1.00581 1.05020 1.20792 0.96369 0.94340 0.97589 1.89235 1.71074 1.21475 1.46020 0.92534 0.91647 0.89192 0.82692 0.84907 0.85175 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.15 12.95 55.43 0.72 -23.43 15 2 C 0.08 2.19 5.42 -17.82 -0.10 2.09 15 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.37 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 15 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.54 -14.42 8.83 -34.44 -0.30 -14.72 15 8 H 0.07 1.71 7.78 -52.48 -0.41 1.30 15 9 C 0.19 4.64 3.51 -26.87 -0.09 4.54 15 10 H 0.04 1.14 8.14 -51.93 -0.42 0.72 15 11 C 0.02 0.42 7.37 38.17 0.28 0.71 15 12 O -0.39 -8.08 11.24 -59.04 -0.66 -8.75 15 13 C 0.26 5.40 4.30 36.00 0.15 5.56 15 14 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 15 C -0.11 -1.99 5.57 -104.62 -0.58 -2.58 15 16 C -0.05 -0.95 9.38 -39.59 -0.37 -1.33 15 17 C -0.16 -2.61 10.03 -39.51 -0.40 -3.01 15 18 C 0.09 1.39 7.30 -39.42 -0.29 1.11 15 19 F -0.15 -2.22 17.27 2.25 0.04 -2.18 15 20 C -0.17 -2.40 10.03 -39.51 -0.40 -2.79 15 21 C -0.07 -1.13 9.63 -39.59 -0.38 -1.51 15 22 O -0.36 -8.82 8.95 -59.04 -0.53 -9.35 15 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 24 H 0.07 1.29 8.04 -51.93 -0.42 0.88 15 25 H 0.09 1.65 8.14 -51.93 -0.42 1.22 15 26 H 0.16 3.24 7.01 -52.49 -0.37 2.88 15 27 H 0.13 1.89 8.06 -52.49 -0.42 1.47 15 28 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 29 H 0.13 1.77 8.06 -52.49 -0.42 1.35 15 LS Contribution 262.35 15.07 3.95 3.95 Total: -1.00 -28.36 262.35 -6.84 -35.20 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -2.87 Total: 1.12 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.47 Total: -11.94 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.72 Total: -23.43 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -1.19 Total: -18.09 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.36 -6.84 -35.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057494380.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.102 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds