Wall clock time and date at job start Mon Mar 30 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99893 * 2 1 4 4 H 1.48499 * 109.46926 * 240.00029 * 3 2 1 5 5 H 1.48502 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47447 * 119.99658 * 3 2 1 7 7 C 1.37872 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00383 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.61701 * 298.37977 * 9 7 2 11 11 C 1.54913 * 110.69857 * 175.10834 * 9 7 2 12 12 O 1.44785 * 101.72043 * 206.04397 * 11 9 7 13 13 C 1.43752 * 104.81900 * 36.10403 * 12 11 9 14 14 H 1.08999 * 109.63139 * 95.56049 * 13 12 11 15 15 C 1.50693 * 109.63380 * 215.80935 * 13 12 11 16 16 C 1.38247 * 119.97335 * 119.08450 * 15 13 12 17 17 C 1.38203 * 120.02212 * 179.76742 * 16 15 13 18 18 C 1.38462 * 119.97313 * 0.51258 * 17 16 15 19 19 F 1.35103 * 120.02606 * 179.77191 * 18 17 16 20 20 C 1.38463 * 119.94969 * 359.74085 * 18 17 16 21 21 C 1.38195 * 119.97221 * 0.02562 * 20 18 17 22 22 O 1.43375 * 108.78880 * 335.68545 * 13 12 11 23 23 H 0.96996 * 120.00268 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.97383 * 324.14778 * 11 9 7 25 25 H 1.08996 * 110.98005 * 87.93358 * 11 9 7 26 26 H 1.07993 * 119.98997 * 0.02562 * 16 15 13 27 27 H 1.07999 * 120.01376 * 180.25836 * 17 16 15 28 28 H 1.07995 * 120.01018 * 180.02562 * 20 18 17 29 29 H 1.07998 * 119.98642 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6390 -2.5889 0.8979 11 6 2.2280 -3.6952 -0.1224 12 8 1.3835 -4.7036 -0.7277 13 6 0.5339 -3.9773 -1.6317 14 1 0.9592 -4.0037 -2.6350 15 6 -0.8374 -4.6018 -1.6498 16 6 -1.9385 -3.8616 -1.2612 17 6 -3.1973 -4.4318 -1.2819 18 6 -3.3539 -5.7481 -1.6819 19 9 -4.5834 -6.3080 -1.6982 20 6 -2.2497 -6.4900 -2.0658 21 6 -0.9926 -5.9162 -2.0489 22 8 0.4385 -2.6184 -1.1846 23 1 -0.4850 0.8400 -0.0004 24 1 3.0676 -3.4481 -0.7720 25 1 2.5771 -4.0164 0.8589 26 1 -1.8156 -2.8362 -0.9454 27 1 -4.0579 -3.8522 -0.9823 28 1 -2.3708 -7.5166 -2.3784 29 1 -0.1312 -6.4945 -2.3487 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057494380.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:30 Heat of formation + Delta-G solvation = -126.751625 kcal Electronic energy + Delta-G solvation = -16553.961787 eV Core-core repulsion = 13548.969494 eV Total energy + Delta-G solvation = -3004.992293 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.92479 -41.23454 -39.48204 -35.83160 -34.67468 -32.62795 -32.06627 -30.34021 -26.93615 -25.56743 -24.02869 -23.05696 -22.28087 -18.91535 -18.77599 -18.05322 -17.55161 -16.93414 -16.68641 -16.58393 -16.13741 -15.96748 -15.17665 -14.59694 -14.54931 -14.27639 -14.04425 -13.79834 -13.29212 -13.20372 -12.95230 -12.75389 -12.41859 -12.28905 -11.94422 -11.32592 -10.89761 -10.72538 -10.22372 -10.07538 -9.62634 -8.21204 -6.43884 0.06132 0.27156 1.43551 1.45595 1.53374 2.38386 2.47957 2.88027 3.05345 3.22815 3.44162 3.82017 3.92399 4.07379 4.21349 4.28891 4.38557 4.39898 4.59203 4.64969 4.91948 4.96783 4.99631 5.11011 5.26047 5.40993 5.59882 5.65725 5.89665 6.03862 6.47709 6.79438 7.33067 8.86960 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.038055 B = 0.006449 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.594762 B = 4340.866828 C = 4935.198104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.179 3.821 10 H 0.010 0.990 11 C 0.032 3.968 12 O -0.392 6.392 13 C 0.258 3.742 14 H 0.089 0.911 15 C -0.128 4.128 16 C -0.072 4.072 17 C -0.162 4.162 18 C 0.090 3.910 19 F -0.142 7.142 20 C -0.150 4.150 21 C -0.066 4.066 22 O -0.384 6.384 23 H 0.264 0.736 24 H 0.077 0.923 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.145 0.855 28 H 0.168 0.832 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -9.979 -3.533 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.599 4.599 8 H 0.095 0.905 9 C 0.124 3.876 10 H 0.027 0.973 11 C -0.044 4.044 12 O -0.314 6.314 13 C 0.162 3.838 14 H 0.106 0.894 15 C -0.128 4.128 16 C -0.090 4.090 17 C -0.180 4.180 18 C 0.071 3.929 19 F -0.120 7.120 20 C -0.168 4.168 21 C -0.084 4.084 22 O -0.306 6.306 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.131 0.869 26 H 0.137 0.863 27 H 0.163 0.837 28 H 0.186 0.814 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.253 -9.966 -3.585 10.828 hybrid contribution 0.003 1.101 0.165 1.113 sum -2.250 -8.865 -3.420 9.765 Atomic orbital electron populations 1.70142 1.07761 1.27902 1.47589 1.25943 0.95633 1.03207 0.92796 0.85498 0.78305 0.77870 0.79265 1.19352 1.21047 1.18715 1.21368 0.93506 0.90635 1.54397 0.90505 1.21207 0.87447 0.94622 0.84368 0.97273 1.24500 0.94052 0.86575 0.99300 1.89048 1.50760 1.32011 1.59537 1.22676 0.87676 0.79910 0.93513 0.89366 1.20418 0.94890 0.95758 1.01771 1.20966 0.91613 1.00518 0.95933 1.21248 0.98593 0.94505 1.03684 1.17843 0.80366 0.92237 1.02427 1.91476 1.40910 1.85263 1.94397 1.21344 0.90677 1.01939 1.02882 1.21004 0.97894 0.92949 0.96544 1.89169 1.71403 1.24200 1.45779 0.92673 0.90511 0.86879 0.86304 0.83672 0.81446 0.82637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.19 12.95 21.45 0.28 -51.91 15 2 C 0.03 1.50 5.42 84.65 0.46 1.96 15 3 Si 0.97 42.12 29.54 68.60 2.03 44.15 15 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 7 C -0.56 -30.20 8.83 25.60 0.23 -29.97 15 8 H 0.08 3.86 7.78 -2.91 -0.02 3.84 15 9 C 0.18 9.09 3.51 30.50 0.11 9.20 15 10 H 0.01 0.54 8.14 -2.39 -0.02 0.52 15 11 C 0.03 1.27 7.37 72.64 0.54 1.81 15 12 O -0.39 -15.65 11.24 -126.22 -1.42 -17.07 15 13 C 0.26 10.58 4.30 71.23 0.31 10.89 15 14 H 0.09 3.32 8.14 -2.39 -0.02 3.30 15 15 C -0.13 -4.68 5.57 -19.86 -0.11 -4.79 15 16 C -0.07 -2.76 9.38 22.26 0.21 -2.55 15 17 C -0.16 -5.19 10.03 22.31 0.22 -4.97 15 18 C 0.09 2.60 7.30 22.38 0.16 2.76 15 19 F -0.14 -3.90 17.27 44.97 0.78 -3.13 15 20 C -0.15 -3.80 10.03 22.31 0.22 -3.58 15 21 C -0.07 -1.88 9.63 22.26 0.21 -1.67 15 22 O -0.38 -19.63 8.95 -126.22 -1.13 -20.76 15 23 H 0.26 14.56 8.31 -92.71 -0.77 13.79 15 24 H 0.08 2.93 8.04 -2.39 -0.02 2.91 15 25 H 0.11 3.99 8.14 -2.39 -0.02 3.97 15 26 H 0.12 5.40 7.01 -2.91 -0.02 5.38 15 27 H 0.15 4.14 8.06 -2.91 -0.02 4.12 15 28 H 0.17 3.03 8.06 -2.91 -0.02 3.01 15 29 H 0.16 3.65 8.06 -2.91 -0.02 3.62 15 Total: -1.00 -61.83 262.35 4.25 -57.59 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.16 Total: 12.05 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 2.56 Total: -20.92 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.28 Total: -51.91 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -2.55 Total: -37.83 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -61.83 4.25 -57.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057494380.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.166 kcal (2) G-P(sol) polarization free energy of solvation -61.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds