Wall clock time and date at job start Mon Mar 30 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99809 * 2 1 4 4 H 1.48500 * 109.46684 * 269.99631 * 3 2 1 5 5 H 1.48502 * 109.47136 * 29.99618 * 3 2 1 6 6 H 1.48498 * 109.47064 * 150.00095 * 3 2 1 7 7 C 1.37876 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00481 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.86595 * 303.81073 * 9 7 2 11 11 C 1.54909 * 110.97989 * 180.02562 * 9 7 2 12 12 O 1.44194 * 103.07686 * 206.29427 * 11 9 7 13 13 C 1.43363 * 107.29042 * 21.43082 * 12 11 9 14 14 H 1.08994 * 109.63558 * 240.94152 * 13 12 11 15 15 C 1.50706 * 109.62957 * 120.54737 * 13 12 11 16 16 C 1.38244 * 119.97008 * 61.45680 * 15 13 12 17 17 C 1.38205 * 120.02263 * 179.97438 * 16 15 13 18 18 C 1.38459 * 119.97412 * 0.28333 * 17 16 15 19 19 F 1.35099 * 120.02759 * 179.72396 * 18 17 16 20 20 C 1.38466 * 119.94836 * 359.48301 * 18 17 16 21 21 C 1.38195 * 119.97197 * 0.49199 * 20 18 17 22 22 O 1.43749 * 108.79050 * 0.67423 * 13 12 11 23 23 H 0.96997 * 120.00335 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.69945 * 87.89368 * 11 9 7 25 25 H 1.09003 * 110.84274 * 324.75897 * 11 9 7 26 26 H 1.07999 * 119.98932 * 359.97438 * 16 15 13 27 27 H 1.08002 * 120.00949 * 179.97438 * 17 16 15 28 28 H 1.07997 * 120.00962 * 180.25357 * 20 18 17 29 29 H 1.08000 * 119.98534 * 179.78274 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5658 -2.5518 0.8466 11 6 2.2264 -3.7026 0.0018 12 8 1.4540 -4.7492 -0.6205 13 6 0.4161 -4.1177 -1.3815 14 1 -0.5572 -4.4302 -1.0034 15 6 0.5441 -4.5061 -2.8321 16 6 0.4336 -5.8329 -3.2041 17 6 0.5503 -6.1902 -4.5340 18 6 0.7838 -5.2193 -5.4932 19 9 0.9036 -5.5681 -6.7929 20 6 0.8894 -3.8901 -5.1200 21 6 0.7719 -3.5352 -3.7895 22 8 0.5472 -2.6923 -1.2499 23 1 -0.4850 0.8400 -0.0004 24 1 2.4973 -3.9779 1.0211 25 1 3.1174 -3.4804 -0.5854 26 1 0.2560 -6.5905 -2.4552 27 1 0.4644 -7.2269 -4.8244 28 1 1.0674 -3.1316 -5.8678 29 1 0.8577 -2.4989 -3.4977 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057494384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:33 Heat of formation + Delta-G solvation = -111.842436 kcal Electronic energy + Delta-G solvation = -16529.573918 eV Core-core repulsion = 13525.228135 eV Total energy + Delta-G solvation = -3004.345782 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.74015 -39.64057 -38.09677 -34.03963 -32.79759 -31.14549 -30.83138 -28.64133 -25.17053 -23.95937 -22.81442 -21.26670 -20.79631 -17.54952 -17.02585 -16.30090 -16.14991 -15.69084 -15.41594 -14.85247 -14.60545 -14.08829 -13.72261 -13.26126 -13.14531 -12.86676 -12.49917 -12.15363 -11.75213 -11.73377 -11.36370 -11.00354 -10.73405 -10.59351 -10.27355 -9.47220 -9.06172 -8.85667 -8.81893 -8.49687 -8.35510 -6.23732 -4.39156 1.34056 1.49862 3.20880 3.27967 3.30256 3.80114 4.25053 4.44229 4.51347 4.69863 5.00755 5.06598 5.22107 5.55949 5.64849 5.75842 5.96104 6.03711 6.13755 6.14457 6.27266 6.31563 6.38018 6.57159 6.74641 6.88673 7.13714 7.26883 7.67459 7.97360 8.26567 8.70513 9.33750 10.84251 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.006636 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.031063 B = 4218.154967 C = 4756.112636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.184 3.816 10 H 0.047 0.953 11 C 0.024 3.976 12 O -0.399 6.399 13 C 0.262 3.738 14 H 0.077 0.923 15 C -0.105 4.105 16 C -0.071 4.071 17 C -0.165 4.165 18 C 0.090 3.910 19 F -0.147 7.147 20 C -0.162 4.162 21 C -0.054 4.054 22 O -0.359 6.359 23 H 0.266 0.734 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 -8.178 -5.643 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.128 4.128 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.088 0.912 9 C 0.129 3.871 10 H 0.065 0.935 11 C -0.052 4.052 12 O -0.321 6.321 13 C 0.166 3.834 14 H 0.094 0.906 15 C -0.106 4.106 16 C -0.089 4.089 17 C -0.183 4.183 18 C 0.071 3.929 19 F -0.126 7.126 20 C -0.180 4.180 21 C -0.072 4.072 22 O -0.280 6.280 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.436 -8.132 -5.811 10.005 hybrid contribution 0.423 0.824 -0.246 0.959 sum 0.859 -7.308 -6.057 9.531 Atomic orbital electron populations 1.70008 1.06183 1.27302 1.46262 1.25095 0.94862 0.99693 0.93140 0.86480 0.79877 0.82551 0.78467 1.20244 1.20919 1.19520 1.20855 0.92914 0.89080 1.54267 0.91242 1.21521 0.88425 0.93303 0.83824 0.93533 1.24356 0.95928 0.87870 0.97062 1.88733 1.44906 1.32410 1.66053 1.22417 0.91149 0.83108 0.86771 0.90579 1.20450 1.00361 0.93425 0.96354 1.20777 0.97426 0.95834 0.94903 1.20997 1.05374 0.99109 0.92855 1.17763 1.03371 0.93828 0.77968 1.91458 1.93697 1.92915 1.34494 1.21182 1.04777 0.94359 0.97711 1.21165 0.93786 1.01552 0.90648 1.89536 1.78619 1.15952 1.43904 0.92444 0.89968 0.91838 0.85031 0.85094 0.84937 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.30 13.21 55.43 0.73 -23.56 15 2 C 0.08 2.12 5.46 -17.82 -0.10 2.03 15 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 15 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.53 -14.16 8.84 -34.44 -0.30 -14.46 15 8 H 0.07 1.77 7.76 -52.48 -0.41 1.37 15 9 C 0.18 4.55 3.25 -26.88 -0.09 4.46 15 10 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 11 C 0.02 0.50 7.51 38.16 0.29 0.79 15 12 O -0.40 -8.21 11.11 -59.04 -0.66 -8.86 15 13 C 0.26 5.37 4.30 36.01 0.15 5.52 15 14 H 0.08 1.48 8.14 -51.93 -0.42 1.05 15 15 C -0.11 -1.91 5.56 -104.61 -0.58 -2.50 15 16 C -0.07 -1.09 9.64 -39.59 -0.38 -1.47 15 17 C -0.16 -2.32 10.03 -39.51 -0.40 -2.72 15 18 C 0.09 1.36 7.30 -39.42 -0.29 1.07 15 19 F -0.15 -2.17 17.27 2.25 0.04 -2.13 15 20 C -0.16 -2.53 10.03 -39.51 -0.40 -2.93 15 21 C -0.05 -0.96 9.38 -39.59 -0.37 -1.34 15 22 O -0.36 -8.85 9.45 -59.04 -0.56 -9.40 15 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 24 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 25 H 0.06 1.32 8.01 -51.93 -0.42 0.91 15 26 H 0.13 1.77 8.06 -52.49 -0.42 1.34 15 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 29 H 0.15 2.96 7.01 -52.49 -0.37 2.59 15 LS Contribution 262.88 15.07 3.96 3.96 Total: -1.00 -28.42 262.88 -6.83 -35.25 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -2.86 Total: 1.00 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.46 Total: -11.55 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.73 Total: -23.56 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.21 Total: -18.27 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.42 -6.83 -35.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057494384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.592 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds