Wall clock time and date at job start Mon Mar 30 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99809 * 2 1 4 4 H 1.48500 * 109.46684 * 269.99631 * 3 2 1 5 5 H 1.48502 * 109.47136 * 29.99618 * 3 2 1 6 6 H 1.48498 * 109.47064 * 150.00095 * 3 2 1 7 7 C 1.37876 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00481 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.86595 * 303.81073 * 9 7 2 11 11 C 1.54909 * 110.97989 * 180.02562 * 9 7 2 12 12 O 1.44194 * 103.07686 * 206.29427 * 11 9 7 13 13 C 1.43363 * 107.29042 * 21.43082 * 12 11 9 14 14 H 1.08994 * 109.63558 * 240.94152 * 13 12 11 15 15 C 1.50706 * 109.62957 * 120.54737 * 13 12 11 16 16 C 1.38244 * 119.97008 * 61.45680 * 15 13 12 17 17 C 1.38205 * 120.02263 * 179.97438 * 16 15 13 18 18 C 1.38459 * 119.97412 * 0.28333 * 17 16 15 19 19 F 1.35099 * 120.02759 * 179.72396 * 18 17 16 20 20 C 1.38466 * 119.94836 * 359.48301 * 18 17 16 21 21 C 1.38195 * 119.97197 * 0.49199 * 20 18 17 22 22 O 1.43749 * 108.79050 * 0.67423 * 13 12 11 23 23 H 0.96997 * 120.00335 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.69945 * 87.89368 * 11 9 7 25 25 H 1.09003 * 110.84274 * 324.75897 * 11 9 7 26 26 H 1.07999 * 119.98932 * 359.97438 * 16 15 13 27 27 H 1.08002 * 120.00949 * 179.97438 * 17 16 15 28 28 H 1.07997 * 120.00962 * 180.25357 * 20 18 17 29 29 H 1.08000 * 119.98534 * 179.78274 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5658 -2.5518 0.8466 11 6 2.2264 -3.7026 0.0018 12 8 1.4540 -4.7492 -0.6205 13 6 0.4161 -4.1177 -1.3815 14 1 -0.5572 -4.4302 -1.0034 15 6 0.5441 -4.5061 -2.8321 16 6 0.4336 -5.8329 -3.2041 17 6 0.5503 -6.1902 -4.5340 18 6 0.7838 -5.2193 -5.4932 19 9 0.9036 -5.5681 -6.7929 20 6 0.8894 -3.8901 -5.1200 21 6 0.7719 -3.5352 -3.7895 22 8 0.5472 -2.6923 -1.2499 23 1 -0.4850 0.8400 -0.0004 24 1 2.4973 -3.9779 1.0211 25 1 3.1174 -3.4804 -0.5854 26 1 0.2560 -6.5905 -2.4552 27 1 0.4644 -7.2269 -4.8244 28 1 1.0674 -3.1316 -5.8678 29 1 0.8577 -2.4989 -3.4977 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057494384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:32 Heat of formation + Delta-G solvation = -128.299923 kcal Electronic energy + Delta-G solvation = -16530.287568 eV Core-core repulsion = 13525.228135 eV Total energy + Delta-G solvation = -3005.059432 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.92418 -41.24416 -39.49441 -35.84242 -34.73344 -32.64883 -32.08521 -30.36606 -27.01795 -25.53762 -24.12811 -23.00070 -22.23523 -19.11692 -18.60739 -18.03988 -17.55674 -17.24022 -16.60419 -16.44385 -16.36036 -15.65612 -15.21688 -14.74934 -14.51085 -14.34456 -14.13395 -13.87340 -13.26081 -13.18593 -13.07988 -12.80405 -12.38166 -12.20565 -11.95357 -11.32119 -10.88782 -10.67903 -10.36495 -10.08009 -9.65681 -8.26851 -6.49286 0.06061 0.26544 1.42299 1.43380 1.54333 2.35768 2.49154 2.81923 3.02781 3.22403 3.39131 3.82012 3.92752 4.10406 4.19391 4.28367 4.37243 4.42680 4.57752 4.61252 4.94369 4.98202 4.98592 5.10392 5.25328 5.34905 5.57621 5.62498 5.88728 6.00007 6.45515 6.70475 7.27958 8.82217 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.006636 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.031063 B = 4218.154967 C = 4756.112636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.028 3.972 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.175 3.825 10 H 0.021 0.979 11 C 0.035 3.965 12 O -0.396 6.396 13 C 0.258 3.742 14 H 0.084 0.916 15 C -0.126 4.126 16 C -0.066 4.066 17 C -0.150 4.150 18 C 0.090 3.910 19 F -0.142 7.142 20 C -0.160 4.160 21 C -0.073 4.073 22 O -0.385 6.385 23 H 0.267 0.733 24 H 0.108 0.892 25 H 0.065 0.935 26 H 0.154 0.846 27 H 0.167 0.833 28 H 0.149 0.851 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -9.353 -6.510 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.589 4.589 8 H 0.093 0.907 9 C 0.120 3.880 10 H 0.039 0.961 11 C -0.041 4.041 12 O -0.318 6.318 13 C 0.162 3.838 14 H 0.101 0.899 15 C -0.126 4.126 16 C -0.084 4.084 17 C -0.168 4.168 18 C 0.071 3.929 19 F -0.120 7.120 20 C -0.178 4.178 21 C -0.091 4.091 22 O -0.306 6.306 23 H 0.076 0.924 24 H 0.126 0.874 25 H 0.083 0.917 26 H 0.172 0.828 27 H 0.185 0.815 28 H 0.167 0.833 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.294 -9.324 -6.679 11.542 hybrid contribution 0.123 1.094 -0.029 1.101 sum 1.418 -8.230 -6.708 10.712 Atomic orbital electron populations 1.70133 1.07829 1.28171 1.47672 1.25967 0.95633 1.03336 0.92623 0.85410 0.78902 0.78028 0.78453 1.20092 1.20516 1.18219 1.21242 0.93434 0.90210 1.54034 0.90688 1.21435 0.88796 0.94580 0.83210 0.96137 1.24250 0.94879 0.86388 0.98556 1.88707 1.44913 1.32014 1.66151 1.22601 0.91383 0.81176 0.88636 0.89917 1.20356 1.02554 0.94964 0.94746 1.20969 0.96522 0.94779 0.96134 1.21336 1.03049 1.00612 0.91793 1.17846 1.02924 0.93722 0.78407 1.91478 1.93595 1.92791 1.34181 1.21264 1.04146 0.95488 0.96943 1.20945 0.95899 1.00309 0.91939 1.89476 1.78916 1.18738 1.43481 0.92421 0.87441 0.91719 0.82835 0.81529 0.83348 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.20 13.21 21.45 0.28 -51.92 15 2 C 0.03 1.50 5.46 84.65 0.46 1.96 15 3 Si 0.97 41.99 29.54 68.60 2.03 44.01 15 4 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 6 H -0.26 -10.58 7.11 99.48 0.71 -9.88 15 7 C -0.55 -29.73 8.84 25.60 0.23 -29.51 15 8 H 0.08 3.83 7.76 -2.91 -0.02 3.81 15 9 C 0.17 8.86 3.25 30.50 0.10 8.96 15 10 H 0.02 1.14 8.14 -2.38 -0.02 1.12 15 11 C 0.04 1.46 7.51 72.63 0.55 2.01 15 12 O -0.40 -15.98 11.11 -126.22 -1.40 -17.38 15 13 C 0.26 10.64 4.30 71.24 0.31 10.95 15 14 H 0.08 3.24 8.14 -2.39 -0.02 3.22 15 15 C -0.13 -4.50 5.56 -19.86 -0.11 -4.61 15 16 C -0.07 -1.86 9.64 22.26 0.21 -1.65 15 17 C -0.15 -3.69 10.03 22.31 0.22 -3.47 15 18 C 0.09 2.49 7.30 22.38 0.16 2.65 15 19 F -0.14 -3.76 17.27 44.97 0.78 -2.98 15 20 C -0.16 -4.83 10.03 22.31 0.22 -4.60 15 21 C -0.07 -2.64 9.38 22.26 0.21 -2.43 15 22 O -0.38 -19.59 9.45 -126.22 -1.19 -20.78 15 23 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 24 H 0.11 3.86 8.14 -2.39 -0.02 3.84 15 25 H 0.06 2.66 8.01 -2.39 -0.02 2.64 15 26 H 0.15 3.62 8.06 -2.91 -0.02 3.59 15 27 H 0.17 2.95 8.06 -2.91 -0.02 2.93 15 28 H 0.15 3.87 8.06 -2.91 -0.02 3.85 15 29 H 0.12 5.05 7.01 -2.91 -0.02 5.03 15 Total: -1.00 -61.31 262.88 4.21 -57.09 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.16 Total: 11.69 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 2.56 Total: -19.74 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.28 Total: -51.92 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -2.60 Total: -38.16 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -61.31 4.21 -57.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057494384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.206 kcal (2) G-P(sol) polarization free energy of solvation -61.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds