Wall clock time and date at job start Mon Mar 30 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30086 * 124.98321 * 2 1 4 4 C 1.35943 * 109.74204 * 180.25462 * 3 2 1 5 5 C 1.39707 * 133.43734 * 179.74885 * 4 3 2 6 6 C 1.37867 * 119.78899 * 180.02562 * 5 4 3 7 7 F 1.35099 * 119.77498 * 179.97438 * 6 5 4 8 8 C 1.39112 * 120.44629 * 359.95939 * 6 5 4 9 9 F 1.35099 * 119.81570 * 180.02562 * 8 6 5 10 10 C 1.38113 * 120.36480 * 0.02562 * 8 6 5 11 11 C 1.38735 * 119.84209 * 0.02562 * 10 8 6 12 12 N 1.36568 * 124.98691 * 179.81074 * 2 1 3 13 13 C 1.37302 * 126.39867 * 0.02562 * 12 2 1 14 14 H 1.08008 * 120.00342 * 40.90837 * 13 12 2 15 15 C 1.38901 * 120.00141 * 220.90807 * 13 12 2 16 16 N 1.31388 * 120.00314 * 203.54554 * 15 13 12 17 17 Si 1.86800 * 119.99787 * 23.54348 * 15 13 12 18 18 H 1.48499 * 109.47231 * 264.69959 * 17 15 13 19 19 H 1.48507 * 109.47085 * 24.70004 * 17 15 13 20 20 H 1.48497 * 109.47191 * 144.69570 * 17 15 13 21 21 H 1.09006 * 109.47038 * 264.41909 * 1 2 3 22 22 H 1.08998 * 109.47463 * 24.41485 * 1 2 3 23 23 H 1.08998 * 109.47434 * 144.42236 * 1 2 3 24 24 H 1.08002 * 120.10084 * 0.03740 * 5 4 3 25 25 H 1.08000 * 120.08077 * 179.97438 * 10 8 6 26 26 H 0.97001 * 120.00179 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2528 1.0658 0.0000 4 6 3.5644 0.7085 -0.0057 5 6 4.7578 1.4347 -0.0126 6 6 5.9649 0.7687 -0.0178 7 9 7.1188 1.4712 -0.0251 8 6 6.0027 -0.6220 -0.0154 9 9 7.1927 -1.2616 -0.0200 10 6 4.8305 -1.3522 -0.0082 11 6 3.6082 -0.6959 -0.0040 12 7 2.2900 -1.1189 0.0037 13 6 1.8517 -2.4201 0.0075 14 1 1.0097 -2.7081 -0.6044 15 6 2.4913 -3.3660 0.7983 16 7 2.4143 -4.6408 0.4897 17 14 3.4611 -2.8258 2.3007 18 1 4.8948 -2.6856 1.9403 19 1 2.9417 -1.5204 2.7820 20 1 3.3175 -3.8417 3.3742 21 1 -0.3633 -0.0999 1.0228 22 1 -0.3634 0.9357 -0.4248 23 1 -0.3634 -0.8358 -0.5979 24 1 4.7348 2.5145 -0.0137 25 1 4.8652 -2.4317 -0.0067 26 1 2.8612 -5.3014 1.0418 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057805268.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:13 Heat of formation + Delta-G solvation = -22.009526 kcal Electronic energy + Delta-G solvation = -16667.987913 eV Core-core repulsion = 13576.370025 eV Total energy + Delta-G solvation = -3091.617889 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.84306 -47.92533 -41.38616 -36.30649 -34.32901 -32.09480 -30.43099 -29.60201 -26.66452 -25.43513 -22.16230 -21.82086 -19.62954 -18.59374 -17.45098 -16.66279 -16.37080 -15.80209 -15.38998 -14.59252 -14.55633 -14.39499 -14.00453 -13.63851 -13.11774 -12.92843 -12.77305 -12.37612 -12.16261 -11.82986 -11.49210 -11.35409 -10.78158 -10.52603 -10.24107 -9.99307 -9.31475 -9.04627 -7.69667 -7.42603 -7.11585 -4.80581 1.30906 1.80608 2.82650 2.98307 3.06534 3.41576 3.69692 3.80516 4.20590 4.40925 4.46542 4.75478 5.05395 5.29242 5.68405 5.76828 5.94248 6.03104 6.04915 6.21962 6.35365 6.39016 6.44974 6.78261 7.12141 7.29175 7.47857 7.73986 8.33686 8.71347 8.82212 9.93717 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.022522 B = 0.012931 C = 0.009083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.915299 B = 2164.886258 C = 3081.828875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.235 3.765 3 N -0.515 5.515 4 C 0.051 3.949 5 C -0.081 4.081 6 C 0.044 3.956 7 F -0.140 7.140 8 C 0.044 3.956 9 F -0.138 7.138 10 C -0.090 4.090 11 C 0.017 3.983 12 N -0.295 5.295 13 C -0.362 4.362 14 H 0.127 0.873 15 C 0.088 3.912 16 N -0.814 5.814 17 Si 0.860 3.140 18 H -0.248 1.248 19 H -0.256 1.256 20 H -0.273 1.273 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 4.880 0.619 5.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 N -0.237 5.237 4 C -0.075 4.075 5 C -0.102 4.102 6 C 0.021 3.979 7 F -0.118 7.118 8 C 0.021 3.979 9 F -0.117 7.117 10 C -0.111 4.111 11 C -0.099 4.099 12 N 0.034 4.966 13 C -0.489 4.489 14 H 0.144 0.856 15 C -0.128 4.128 16 N -0.442 5.442 17 Si 0.683 3.317 18 H -0.172 1.172 19 H -0.179 1.179 20 H -0.199 1.199 21 H 0.095 0.905 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.158 0.842 25 H 0.158 0.842 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.584 5.260 0.652 5.332 hybrid contribution 1.183 -0.976 0.770 1.716 sum 1.767 4.284 1.423 4.848 Atomic orbital electron populations 1.20091 0.85165 1.03228 1.03193 1.23616 0.95606 0.81137 1.02299 1.70270 0.99768 1.27840 1.25815 1.18474 0.92033 0.89842 1.07124 1.19676 0.87716 0.99797 1.02978 1.16931 0.82071 0.87429 1.11482 1.91440 1.47055 1.78547 1.94807 1.16859 0.81006 0.88340 1.11651 1.91442 1.43598 1.81898 1.94735 1.19757 0.88357 1.00525 1.02446 1.18551 0.86703 0.94429 1.10183 1.41512 1.02051 1.06873 1.46197 1.19294 1.20042 0.79945 1.29622 0.85607 1.25373 0.95305 0.94621 0.97529 1.69747 1.37242 1.01364 1.35860 0.87079 0.81893 0.80376 0.82304 1.17230 1.17904 1.19865 0.90459 0.90139 0.90309 0.84185 0.84161 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.09 36.00 0.36 -0.58 15 2 C 0.23 5.02 7.83 -154.35 -1.21 3.81 15 3 N -0.51 -11.38 11.27 -8.09 -0.09 -11.47 15 4 C 0.05 1.13 7.22 -84.64 -0.61 0.52 15 5 C -0.08 -1.58 10.07 -39.17 -0.39 -1.97 15 6 C 0.04 0.86 7.29 -39.39 -0.29 0.57 15 7 F -0.14 -2.59 17.16 2.25 0.04 -2.55 15 8 C 0.04 0.92 7.30 -39.30 -0.29 0.63 15 9 F -0.14 -2.81 17.17 2.25 0.04 -2.77 15 10 C -0.09 -2.01 7.00 -39.44 -0.28 -2.29 15 11 C 0.02 0.39 5.27 -83.84 -0.44 -0.05 15 12 N -0.30 -6.96 2.41 -56.63 -0.14 -7.09 15 13 C -0.36 -8.83 9.82 -14.86 -0.15 -8.98 15 14 H 0.13 3.10 7.82 -52.48 -0.41 2.69 15 15 C 0.09 2.15 4.90 -17.50 -0.09 2.06 15 16 N -0.81 -20.37 13.95 55.49 0.77 -19.60 15 17 Si 0.86 19.43 24.66 -169.99 -4.19 15.23 15 18 H -0.25 -5.50 5.66 56.52 0.32 -5.18 15 19 H -0.26 -6.08 7.11 56.52 0.40 -5.68 15 20 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 21 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.08 1.20 7.74 -51.93 -0.40 0.80 15 24 H 0.14 2.34 8.06 -52.49 -0.42 1.91 15 25 H 0.14 3.18 6.04 -52.49 -0.32 2.86 15 26 H 0.29 6.66 8.31 -40.82 -0.34 6.33 15 LS Contribution 237.54 15.07 3.58 3.58 Total: -1.00 -26.36 237.54 -4.98 -31.34 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -1.61 Total: -0.40 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -3.37 Total: -6.27 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.55 Total: -38.16 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.08 Total: -5.32 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.19 Total: 15.23 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.36 -4.98 -31.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057805268.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.327 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds