Wall clock time and date at job start Mon Mar 30 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 C 1.38392 * 119.92500 * 269.72824 * 11 10 9 13 13 C 1.38352 * 120.30287 * 179.72386 * 12 11 10 14 14 C 1.37969 * 120.14753 * 0.54686 * 13 12 11 15 15 C 1.39606 * 119.84931 * 359.72955 * 14 13 12 16 16 C 1.47726 * 120.15049 * 180.02562 * 15 14 13 17 17 O 1.21471 * 119.99723 * 179.97438 * 16 15 14 18 18 O 1.34708 * 120.00014 * 359.97380 * 16 15 14 19 19 C 1.37928 * 119.92675 * 90.00077 * 11 10 9 20 20 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 22 22 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 23 23 H 1.08000 * 119.84967 * 359.97438 * 12 11 10 24 24 H 1.08001 * 119.92455 * 180.25268 * 13 12 11 25 25 H 1.08003 * 120.07136 * 179.74707 * 14 13 12 26 26 H 0.96694 * 117.00000 * 179.97438 * 18 16 15 27 27 H 1.08000 * 120.07469 * 359.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 6 1.7508 -5.9571 1.1746 13 6 1.2603 -7.2508 1.1775 14 6 1.0141 -7.9012 -0.0141 15 6 1.2558 -7.2489 -1.2245 16 6 0.9941 -7.9388 -2.5043 17 8 1.2049 -7.3685 -3.5559 18 8 0.5216 -9.2003 -2.5051 19 6 1.7456 -5.9412 -1.2201 20 1 -0.4849 0.8401 0.0004 21 1 3.1244 -3.7267 -0.9039 22 1 3.1244 -3.7361 0.8761 23 1 1.9463 -5.4543 2.1103 24 1 1.0741 -7.7543 2.1147 25 1 0.6351 -8.9125 -0.0104 26 1 0.3655 -9.6101 -3.3669 27 1 1.9343 -5.4307 -2.1529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058239110.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:55 Heat of formation + Delta-G solvation = -80.335058 kcal Electronic energy + Delta-G solvation = -13597.049511 eV Core-core repulsion = 11024.450073 eV Total energy + Delta-G solvation = -2572.599438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.34668 -38.64395 -36.09356 -32.68529 -32.44159 -31.11039 -26.85954 -25.41304 -24.66926 -21.70821 -20.86952 -18.05450 -17.69218 -16.92514 -15.85384 -15.61436 -15.04021 -14.84120 -14.43217 -14.25239 -13.34660 -13.23616 -12.74927 -12.28157 -12.19630 -11.59315 -11.55353 -11.19992 -11.07908 -10.91889 -10.75423 -10.55466 -9.97487 -9.10285 -8.91962 -8.69084 -8.17284 -6.59473 -6.26999 -3.98720 0.80441 1.45432 2.58952 2.99077 3.20373 3.20786 3.27594 3.47466 4.05542 4.20166 4.85043 4.97711 5.06347 5.09812 5.24818 5.46368 5.49110 5.53163 5.82214 6.01457 6.12336 6.33716 6.39497 6.43736 6.49739 6.78773 6.98613 7.56720 7.87476 8.32201 9.19275 10.80945 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.041488 B = 0.005239 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.737127 B = 5343.433816 C = 5695.241925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.075 0.925 9 S -0.112 6.112 10 C -0.085 4.085 11 C -0.056 4.056 12 C -0.071 4.071 13 C -0.134 4.134 14 C -0.073 4.073 15 C -0.133 4.133 16 C 0.528 3.472 17 O -0.513 6.513 18 O -0.515 6.515 19 C -0.043 4.043 20 H 0.268 0.732 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.131 0.869 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.411 0.589 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 -15.725 0.429 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.670 4.670 8 H 0.093 0.907 9 S 0.118 5.882 10 C -0.233 4.233 11 C -0.057 4.057 12 C -0.090 4.090 13 C -0.152 4.152 14 C -0.092 4.092 15 C -0.134 4.134 16 C 0.373 3.627 17 O -0.403 6.403 18 O -0.327 6.327 19 C -0.063 4.063 20 H 0.078 0.922 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.149 0.851 24 H 0.147 0.853 25 H 0.151 0.849 26 H 0.269 0.731 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.363 -15.408 0.526 15.477 hybrid contribution 1.650 1.056 -0.611 2.052 sum 3.013 -14.352 -0.084 14.665 Atomic orbital electron populations 1.70019 1.05951 1.27476 1.46974 1.25023 0.95087 0.99124 0.94457 0.86143 0.79420 0.81403 0.78430 1.20213 1.20740 1.19629 1.22738 0.94685 0.90739 1.58872 0.90733 1.84952 1.07834 0.98647 1.96780 1.22390 1.02928 0.93618 1.04334 1.19546 0.98511 0.95091 0.92548 1.21405 0.95321 0.94072 0.98241 1.21090 1.01009 0.95197 0.97945 1.21330 0.96877 0.99746 0.91292 1.18933 1.08721 0.95383 0.90396 1.20991 0.72952 0.79101 0.89657 1.90897 1.49184 1.66367 1.33809 1.84558 1.78149 1.29353 1.40618 1.21177 0.94099 0.91896 0.99078 0.92199 0.90643 0.90574 0.85062 0.85277 0.84905 0.73090 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.22 55.49 0.73 -25.06 15 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 15 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.52 -14.73 9.50 30.94 0.29 -14.44 15 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 15 9 S -0.11 -2.90 21.42 -107.50 -2.30 -5.20 15 10 C -0.09 -1.70 5.80 36.00 0.21 -1.49 15 11 C -0.06 -0.95 5.13 -104.68 -0.54 -1.49 15 12 C -0.07 -1.03 9.69 -39.48 -0.38 -1.41 15 13 C -0.13 -1.64 10.03 -39.64 -0.40 -2.04 15 14 C -0.07 -0.91 9.62 -39.17 -0.38 -1.29 15 15 C -0.13 -1.96 5.87 -104.98 -0.62 -2.58 15 16 C 0.53 7.44 8.27 34.61 0.29 7.73 15 17 O -0.51 -8.78 17.13 -19.24 -0.33 -9.11 15 18 O -0.52 -5.18 12.68 -40.51 -0.51 -5.69 15 19 C -0.04 -0.71 9.24 -39.17 -0.36 -1.07 15 20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 21 H 0.07 1.48 8.08 -51.92 -0.42 1.06 15 22 H 0.08 1.44 8.08 -51.92 -0.42 1.02 15 23 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.13 1.18 8.06 -52.49 -0.42 0.75 15 25 H 0.13 1.33 7.61 -52.48 -0.40 0.93 15 26 H 0.41 2.21 9.11 45.56 0.42 2.62 15 27 H 0.14 2.42 7.65 -52.49 -0.40 2.02 15 LS Contribution 266.75 15.07 4.02 4.02 Total: -1.00 -33.09 266.75 -7.01 -40.10 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -1.61 Total: 0.75 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.98 Total: -16.13 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.73 Total: -25.06 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.84 Total: -14.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.30 Total: -5.20 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.09 -7.01 -40.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058239110.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.235 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds