Wall clock time and date at job start Mon Mar 30 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 C 1.38392 * 119.92500 * 269.72824 * 11 10 9 13 13 C 1.38352 * 120.30287 * 179.72386 * 12 11 10 14 14 C 1.37969 * 120.14753 * 0.54686 * 13 12 11 15 15 C 1.39606 * 119.84931 * 359.72955 * 14 13 12 16 16 C 1.47726 * 120.15049 * 180.02562 * 15 14 13 17 17 O 1.21471 * 119.99723 * 179.97438 * 16 15 14 18 18 O 1.34708 * 120.00014 * 359.97380 * 16 15 14 19 19 C 1.37928 * 119.92675 * 90.00077 * 11 10 9 20 20 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 22 22 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 23 23 H 1.08000 * 119.84967 * 359.97438 * 12 11 10 24 24 H 1.08001 * 119.92455 * 180.25268 * 13 12 11 25 25 H 1.08003 * 120.07136 * 179.74707 * 14 13 12 26 26 H 0.96694 * 117.00000 * 179.97438 * 18 16 15 27 27 H 1.08000 * 120.07469 * 359.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 6 1.7508 -5.9571 1.1746 13 6 1.2603 -7.2508 1.1775 14 6 1.0141 -7.9012 -0.0141 15 6 1.2558 -7.2489 -1.2245 16 6 0.9941 -7.9388 -2.5043 17 8 1.2049 -7.3685 -3.5559 18 8 0.5216 -9.2003 -2.5051 19 6 1.7456 -5.9412 -1.2201 20 1 -0.4849 0.8401 0.0004 21 1 3.1244 -3.7267 -0.9039 22 1 3.1244 -3.7361 0.8761 23 1 1.9463 -5.4543 2.1103 24 1 1.0741 -7.7543 2.1147 25 1 0.6351 -8.9125 -0.0104 26 1 0.3655 -9.6101 -3.3669 27 1 1.9343 -5.4307 -2.1529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058239110.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:55 Heat of formation + Delta-G solvation = -101.872419 kcal Electronic energy + Delta-G solvation = -13597.983441 eV Core-core repulsion = 11024.450073 eV Total energy + Delta-G solvation = -2573.533368 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.43265 -39.76829 -37.10368 -34.62972 -33.90803 -32.22755 -28.41776 -27.42407 -25.77111 -22.86434 -21.98432 -19.79478 -18.91689 -18.17863 -16.94732 -16.90843 -16.69752 -16.27271 -16.22305 -15.41206 -14.90047 -14.39260 -14.12171 -13.72780 -13.62487 -13.18922 -12.93108 -12.75975 -12.62262 -12.57083 -12.15920 -11.75087 -11.65882 -11.16782 -10.52590 -10.04024 -9.62665 -8.69223 -8.38997 -6.15835 -0.32050 0.26426 1.31072 1.39044 1.44323 1.50961 1.83183 2.03048 2.25495 2.87546 2.95579 3.27263 3.72085 3.87840 4.02973 4.15364 4.25367 4.35262 4.65649 4.72422 4.88442 4.99376 5.25425 5.38825 5.40537 5.53003 5.58753 5.87735 6.16713 6.95493 7.03364 8.70205 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.041488 B = 0.005239 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.737127 B = 5343.433816 C = 5695.241925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.016 3.984 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.076 0.924 9 S -0.178 6.178 10 C -0.058 4.058 11 C -0.080 4.080 12 C -0.073 4.073 13 C -0.121 4.121 14 C -0.055 4.055 15 C -0.146 4.146 16 C 0.535 3.465 17 O -0.554 6.554 18 O -0.497 6.497 19 C -0.060 4.060 20 H 0.272 0.728 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.142 0.858 24 H 0.172 0.828 25 H 0.168 0.832 26 H 0.433 0.567 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -17.428 1.556 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.690 4.690 8 H 0.094 0.906 9 S 0.053 5.947 10 C -0.206 4.206 11 C -0.082 4.082 12 C -0.092 4.092 13 C -0.139 4.139 14 C -0.073 4.073 15 C -0.147 4.147 16 C 0.382 3.618 17 O -0.446 6.446 18 O -0.311 6.311 19 C -0.081 4.081 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.103 0.897 23 H 0.160 0.840 24 H 0.189 0.811 25 H 0.185 0.815 26 H 0.296 0.704 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.731 -17.151 1.651 17.317 hybrid contribution 1.514 1.351 -0.953 2.242 sum 3.245 -15.799 0.697 16.144 Atomic orbital electron populations 1.70155 1.07713 1.28605 1.47941 1.26072 0.96020 1.03107 0.93701 0.85008 0.78273 0.76334 0.78748 1.19535 1.19863 1.18483 1.23100 0.94950 0.91964 1.58937 0.90628 1.84902 1.12543 1.00326 1.96962 1.22205 1.00209 0.93844 1.04355 1.19355 1.01091 0.93760 0.93957 1.21633 0.94889 0.95248 0.97475 1.21535 0.98782 0.93924 0.99654 1.21753 0.94594 1.00827 0.90148 1.19077 1.08906 0.94800 0.91961 1.20889 0.72259 0.79889 0.88804 1.90889 1.51087 1.67587 1.35056 1.84487 1.76948 1.27179 1.42445 1.21057 0.95599 0.93280 0.98135 0.91930 0.91281 0.89716 0.84014 0.81066 0.81454 0.70447 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.04 13.22 21.65 0.29 -54.75 15 2 C 0.02 0.91 5.49 84.86 0.47 1.38 15 3 Si 0.99 44.02 29.55 68.60 2.03 46.05 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 15 7 C -0.54 -31.27 9.50 67.96 0.65 -30.63 15 8 H 0.08 4.18 7.80 -2.91 -0.02 4.15 15 9 S -0.18 -9.53 21.42 -56.49 -1.21 -10.74 15 10 C -0.06 -2.39 5.80 71.23 0.41 -1.97 15 11 C -0.08 -2.75 5.13 -19.90 -0.10 -2.86 15 12 C -0.07 -1.98 9.69 22.33 0.22 -1.76 15 13 C -0.12 -2.47 10.03 22.23 0.22 -2.25 15 14 C -0.05 -1.15 9.62 22.54 0.22 -0.93 15 15 C -0.15 -4.11 5.87 -20.10 -0.12 -4.22 15 16 C 0.54 14.41 8.27 70.33 0.58 14.99 15 17 O -0.55 -19.09 17.13 19.93 0.34 -18.75 15 18 O -0.50 -8.46 12.68 -56.18 -0.71 -9.17 15 19 C -0.06 -2.06 9.24 22.54 0.21 -1.85 15 20 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 21 H 0.07 2.84 8.08 -2.40 -0.02 2.82 15 22 H 0.08 3.24 8.08 -2.39 -0.02 3.22 15 23 H 0.14 3.50 8.06 -2.91 -0.02 3.48 15 24 H 0.17 2.11 8.06 -2.91 -0.02 2.09 15 25 H 0.17 2.41 7.61 -2.91 -0.02 2.39 15 26 H 0.43 3.34 9.11 -74.06 -0.67 2.67 15 27 H 0.12 4.35 7.65 -2.91 -0.02 4.32 15 Total: -1.00 -73.91 266.75 4.01 -69.90 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.52 Total: 7.56 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 2.75 Total: -30.10 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.29 Total: -54.75 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.37 Total: -27.92 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -9.53 SS G_CDS: -1.21 Total: -10.74 kcal Total: -73.91 4.01 -69.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058239110.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.971 kcal (2) G-P(sol) polarization free energy of solvation -73.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds