Wall clock time and date at job start Mon Mar 30 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 120.00160 * 2 1 4 4 O 1.42894 * 109.47127 * 134.99585 * 3 2 1 5 5 C 1.35695 * 116.99597 * 180.02562 * 4 3 2 6 6 C 1.39298 * 119.82443 * 0.29066 * 5 4 3 7 7 C 1.36443 * 120.19269 * 180.26109 * 6 5 4 8 8 C 1.40851 * 119.83484 * 359.45255 * 7 6 5 9 9 C 1.41208 * 120.17401 * 180.29999 * 8 7 6 10 10 H 1.07997 * 119.99722 * 334.62710 * 9 8 7 11 11 C 1.39887 * 119.99790 * 154.63048 * 9 8 7 12 12 N 1.30881 * 120.00104 * 342.94432 * 11 9 8 13 13 Si 1.86803 * 119.99773 * 162.95079 * 11 9 8 14 14 H 1.48493 * 109.47423 * 59.99614 * 13 11 9 15 15 H 1.48497 * 109.46890 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47062 * 299.99452 * 13 11 9 17 17 C 1.40812 * 119.64953 * 0.27610 * 8 7 6 18 18 C 1.36526 * 119.80329 * 359.97438 * 17 8 7 19 19 Cl 1.73601 * 119.92015 * 180.02562 * 18 17 8 20 20 H 1.08001 * 120.00085 * 180.02562 * 1 2 3 21 21 H 1.07996 * 120.00013 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.00271 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47031 * 14.99171 * 3 2 1 24 24 H 1.08994 * 109.46921 * 254.99687 * 3 2 1 25 25 H 1.07998 * 119.90066 * 359.97438 * 6 5 4 26 26 H 1.08000 * 120.07818 * 179.72148 * 7 6 5 27 27 H 0.96999 * 120.00257 * 180.02562 * 12 11 9 28 28 H 1.07998 * 120.09537 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9077 2.3437 1.0787 6 6 3.6482 3.4694 0.3004 7 6 4.4321 4.5800 0.4172 8 6 5.4994 4.5909 1.3362 9 6 6.3114 5.7387 1.4674 10 1 6.4091 6.4282 0.6420 11 6 6.9891 5.9826 2.6666 12 7 6.6285 5.3606 3.7603 13 14 8.4086 7.1962 2.7071 14 1 7.9259 8.5367 2.2887 15 1 8.9533 7.2749 4.0863 16 1 9.4747 6.7419 1.7785 17 6 5.7522 3.4512 2.1237 18 6 4.9618 2.3460 1.9912 19 17 5.2703 0.9395 2.9611 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3855 2.1161 0.2658 24 1 2.4755 1.4867 -0.9926 25 1 2.8269 3.4613 -0.4009 26 1 4.2320 5.4501 -0.1904 27 1 7.0982 5.5300 4.5919 28 1 6.5690 3.4516 2.8303 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062721069.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:18 Heat of formation + Delta-G solvation = -25.812534 kcal Electronic energy + Delta-G solvation = -14062.474821 eV Core-core repulsion = 11490.195951 eV Total energy + Delta-G solvation = -2572.278871 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.62591 -38.41863 -37.10687 -35.42461 -34.66162 -31.42755 -31.00787 -27.82432 -26.40411 -23.15196 -22.60436 -20.76829 -19.33711 -18.75806 -17.19571 -16.97758 -16.53502 -16.01601 -15.34793 -14.97798 -14.54839 -14.30299 -13.94452 -13.72087 -13.30308 -12.87066 -12.78175 -12.58504 -12.30527 -12.03636 -11.93800 -11.74028 -11.48295 -11.40669 -10.90470 -10.36148 -9.47657 -8.96210 -8.62278 -6.28903 0.75976 0.89651 1.21821 1.41180 1.50035 1.53437 1.54770 2.21953 2.64663 2.74030 3.57293 3.98195 4.13071 4.27401 4.35086 4.49922 4.64959 4.93762 5.00496 5.04413 5.19846 5.34376 5.41848 5.63669 5.70861 5.76842 5.90725 6.11638 6.46534 6.69549 6.88534 6.95503 8.33053 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.039071 B = 0.006434 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.469177 B = 4350.813145 C = 4940.340605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.171 4.171 3 C 0.083 3.917 4 O -0.326 6.326 5 C 0.002 3.998 6 C -0.153 4.153 7 C -0.198 4.198 8 C 0.066 3.934 9 C -0.491 4.491 10 H 0.085 0.915 11 C 0.034 3.966 12 N -0.826 5.826 13 Si 0.983 3.017 14 H -0.257 1.257 15 H -0.271 1.271 16 H -0.261 1.261 17 C -0.150 4.150 18 C -0.038 4.038 19 Cl -0.095 7.095 20 H 0.126 0.874 21 H 0.107 0.893 22 H 0.116 0.884 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.140 0.860 26 H 0.118 0.882 27 H 0.289 0.711 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 -4.504 -4.819 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.189 4.189 3 C 0.008 3.992 4 O -0.242 6.242 5 C -0.043 4.043 6 C -0.172 4.172 7 C -0.218 4.218 8 C 0.064 3.936 9 C -0.521 4.521 10 H 0.103 0.897 11 C -0.181 4.181 12 N -0.452 5.452 13 Si 0.803 3.197 14 H -0.181 1.181 15 H -0.196 1.196 16 H -0.185 1.185 17 C -0.171 4.171 18 C -0.065 4.065 19 Cl -0.067 7.067 20 H 0.144 0.856 21 H 0.125 0.875 22 H 0.134 0.866 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.158 0.842 26 H 0.136 0.864 27 H 0.100 0.900 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.803 -4.824 -4.378 8.724 hybrid contribution 0.630 0.497 0.267 0.846 sum -5.172 -4.327 -4.111 7.898 Atomic orbital electron populations 1.24071 0.94668 1.03672 0.97278 1.22696 0.96319 0.97128 1.02788 1.21867 0.87820 0.97408 0.92099 1.85932 1.42962 1.35462 1.59855 1.18345 0.95779 0.88693 1.01506 1.20719 1.02120 0.92911 1.01422 1.20938 0.97431 0.98648 1.04770 1.17825 0.91855 0.92497 0.91464 1.19716 1.25426 1.07145 0.99770 0.89700 1.26771 0.99104 0.98181 0.94070 1.69870 1.36578 1.38181 1.00601 0.85235 0.77624 0.78415 0.78389 1.18134 1.19559 1.18493 1.20826 1.00961 0.91012 1.04256 1.19983 0.99214 0.89564 0.97781 1.98240 1.95575 1.41898 1.70980 0.85559 0.87523 0.86619 0.91774 0.91255 0.84237 0.86409 0.90022 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 14.31 67.79 0.97 -2.04 15 2 C -0.17 -4.20 9.89 25.65 0.25 -3.94 15 3 C 0.08 2.48 5.14 71.24 0.37 2.85 15 4 O -0.33 -13.10 9.56 -90.14 -0.86 -13.96 15 5 C 0.00 0.08 6.71 22.81 0.15 0.23 15 6 C -0.15 -6.46 8.96 22.11 0.20 -6.26 15 7 C -0.20 -9.23 9.74 22.49 0.22 -9.01 15 8 C 0.07 3.49 5.57 -21.28 -0.12 3.37 15 9 C -0.49 -25.56 9.04 23.40 0.21 -25.34 15 10 H 0.08 4.16 7.90 -2.91 -0.02 4.14 15 11 C 0.03 1.66 5.15 85.23 0.44 2.10 15 12 N -0.83 -42.94 10.96 21.82 0.24 -42.70 15 13 Si 0.98 37.40 29.59 68.60 2.03 39.43 15 14 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 15 H -0.27 -9.90 7.11 99.48 0.71 -9.19 15 16 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 17 C -0.15 -7.97 8.40 22.50 0.19 -7.78 15 18 C -0.04 -1.89 6.29 22.15 0.14 -1.75 15 19 Cl -0.10 -4.18 28.48 -2.72 -0.08 -4.26 15 20 H 0.13 1.78 8.06 -2.91 -0.02 1.76 15 21 H 0.11 1.81 7.90 -2.91 -0.02 1.79 15 22 H 0.12 2.79 8.06 -2.91 -0.02 2.77 15 23 H 0.06 1.81 7.35 -2.39 -0.02 1.79 15 24 H 0.07 1.94 7.66 -2.39 -0.02 1.92 15 25 H 0.14 4.78 6.27 -2.91 -0.02 4.76 15 26 H 0.12 4.97 8.06 -2.91 -0.02 4.94 15 27 H 0.29 13.70 8.30 -92.71 -0.77 12.93 15 28 H 0.12 6.58 6.19 -2.91 -0.02 6.56 15 Total: -1.00 -58.11 264.85 5.51 -52.59 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.16 Total: 16.49 kcal Atomic # 6 Polarization: -50.60 SS G_CDS: 3.02 Total: -47.58 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.24 Total: -42.70 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.86 Total: -13.96 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Atomic # 17 Polarization: -4.18 SS G_CDS: -0.08 Total: -4.26 kcal Total: -58.11 5.51 -52.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062721069.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.779 kcal (2) G-P(sol) polarization free energy of solvation -58.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds