Wall clock time and date at job start Mon Mar 30 2020 05:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38183 * 119.89687 * 2 1 4 4 C 1.38026 * 120.25077 * 180.25664 * 3 2 1 5 5 C 1.39723 * 120.03305 * 359.48950 * 4 3 2 6 6 C 1.47739 * 120.10477 * 180.23127 * 5 4 3 7 7 O 1.21477 * 119.99953 * 180.02562 * 6 5 4 8 8 O 1.34706 * 120.00503 * 0.02562 * 6 5 4 9 9 C 1.39430 * 119.78834 * 0.25497 * 5 4 3 10 10 C 1.38870 * 119.75235 * 0.02562 * 9 5 4 11 11 S 1.76202 * 120.01662 * 180.02562 * 10 9 5 12 12 C 1.76192 * 100.00222 * 6.91726 * 11 10 9 13 13 H 1.08002 * 120.00146 * 5.67490 * 12 11 10 14 14 C 1.38733 * 120.00244 * 185.67292 * 12 11 10 15 15 N 1.31623 * 119.99567 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00204 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46764 * 60.00379 * 16 14 12 18 18 H 1.48496 * 109.47195 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47421 * 300.00514 * 16 14 12 20 20 H 1.08994 * 109.46863 * 270.25324 * 1 2 3 21 21 H 1.09001 * 109.46685 * 30.25359 * 1 2 3 22 22 H 1.09003 * 109.47196 * 150.25274 * 1 2 3 23 23 H 1.08006 * 119.87623 * 0.02562 * 3 2 1 24 24 H 1.08000 * 119.98403 * 179.76820 * 4 3 2 25 25 H 0.96699 * 117.00827 * 179.97438 * 8 6 5 26 26 H 1.07995 * 120.12643 * 179.97438 * 9 5 4 27 27 H 0.97001 * 119.99966 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1979 0.0000 4 6 3.5760 1.2065 -0.0053 5 6 4.2828 0.0012 0.0000 6 6 5.7602 0.0085 -0.0005 7 8 6.3728 -1.0405 0.0036 8 8 6.4280 1.1784 -0.0057 9 6 3.5894 -1.2084 0.0053 10 6 2.2007 -1.2067 0.0048 11 16 1.3173 -2.7313 0.0122 12 6 2.6543 -3.8585 0.2275 13 1 3.6527 -3.4853 0.4013 14 6 2.4245 -5.2256 0.1737 15 7 1.2077 -5.6805 -0.0386 16 14 3.8420 -6.4207 0.4012 17 1 4.4554 -6.2123 1.7374 18 1 3.3365 -7.8133 0.2998 19 1 4.8611 -6.1865 -0.6532 20 1 -0.3633 0.0045 1.0276 21 1 -0.3633 0.8877 -0.5178 22 1 -0.3634 -0.8923 -0.5099 23 1 1.6520 2.1312 0.0004 24 1 4.1099 2.1453 -0.0091 25 1 7.3939 1.1326 -0.0054 26 1 4.1302 -2.1432 0.0091 27 1 1.0471 -6.6364 -0.0766 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075441602.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:52 Heat of formation + Delta-G solvation = -79.751108 kcal Electronic energy + Delta-G solvation = -14071.408619 eV Core-core repulsion = 11498.834503 eV Total energy + Delta-G solvation = -2572.574116 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.00006 -38.17245 -35.82785 -32.87557 -32.35633 -30.56461 -27.36361 -25.75783 -23.04333 -22.26020 -20.57664 -18.22280 -17.67557 -16.87065 -15.35907 -15.32538 -14.84513 -14.68425 -14.43705 -13.48178 -13.36521 -13.08815 -12.78774 -11.90055 -11.71770 -11.47226 -11.30738 -11.25933 -11.15596 -11.03834 -10.36588 -10.30169 -9.85816 -9.58948 -8.82113 -8.71353 -8.34839 -6.62576 -6.51651 -4.24073 1.17372 1.89865 2.91137 3.06204 3.17376 3.18770 3.25390 3.41119 4.01866 4.24525 4.91191 5.04394 5.25850 5.33594 5.56746 5.60170 5.88140 6.05731 6.06286 6.27603 6.34950 6.56393 6.63640 6.82749 6.85447 7.05876 7.34746 7.49641 8.14231 8.16376 8.97511 10.54654 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.009482 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.518983 B = 2952.271770 C = 4265.899796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.067 4.067 3 C -0.118 4.118 4 C -0.107 4.107 5 C -0.120 4.120 6 C 0.526 3.474 7 O -0.516 6.516 8 O -0.516 6.516 9 C -0.074 4.074 10 C -0.102 4.102 11 S 0.066 5.934 12 C -0.560 4.560 13 H 0.094 0.906 14 C 0.081 3.919 15 N -0.864 5.864 16 Si 0.922 3.078 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.268 1.268 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.407 0.593 26 H 0.151 0.849 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 11.630 0.036 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.124 4.124 6 C 0.372 3.628 7 O -0.406 6.406 8 O -0.328 6.328 9 C -0.099 4.099 10 C -0.218 4.218 11 S 0.323 5.677 12 C -0.706 4.706 13 H 0.112 0.888 14 C -0.129 4.129 15 N -0.498 5.498 16 Si 0.747 3.253 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.193 1.193 20 H 0.090 0.910 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.139 0.861 24 H 0.143 0.857 25 H 0.264 0.736 26 H 0.168 0.832 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.948 10.625 -0.091 10.668 hybrid contribution 2.935 -0.504 0.218 2.986 sum 3.884 10.121 0.127 10.842 Atomic orbital electron populations 1.20766 0.91174 1.02644 1.02426 1.19737 0.95875 0.91606 1.00492 1.20745 0.93675 0.96968 1.02370 1.21043 0.94105 0.96508 1.01486 1.18868 0.87773 0.95216 1.10510 1.21204 0.89273 0.80595 0.71774 1.90883 1.70007 1.33255 1.46449 1.84583 1.26284 1.35611 1.86300 1.21636 0.93567 0.97674 0.97070 1.22624 0.96443 1.00728 1.01971 1.83347 1.11676 0.90129 1.82561 1.23402 0.96617 0.92953 1.57660 0.88843 1.25071 0.96980 0.97685 0.93183 1.69972 1.20017 1.15390 1.44377 0.86131 0.80913 0.78607 0.79623 1.19383 1.20546 1.19326 0.90998 0.91897 0.90651 0.86092 0.85724 0.73587 0.83197 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.56 36.01 0.34 -1.38 15 2 C -0.07 -1.21 5.91 -104.29 -0.62 -1.83 15 3 C -0.12 -1.83 9.67 -39.68 -0.38 -2.22 15 4 C -0.11 -1.71 9.62 -39.10 -0.38 -2.09 15 5 C -0.12 -2.26 5.87 -105.02 -0.62 -2.88 15 6 C 0.53 9.27 8.27 34.61 0.29 9.55 15 7 O -0.52 -10.70 17.13 -19.25 -0.33 -11.03 15 8 O -0.52 -6.65 12.67 -40.51 -0.51 -7.17 15 9 C -0.07 -1.62 8.77 -38.90 -0.34 -1.96 15 10 C -0.10 -2.21 6.09 -38.99 -0.24 -2.44 15 11 S 0.07 1.62 19.84 -107.50 -2.13 -0.51 15 12 C -0.56 -15.31 8.99 30.92 0.28 -15.04 15 13 H 0.09 2.53 4.97 -52.49 -0.26 2.27 15 14 C 0.08 2.21 5.49 -17.46 -0.10 2.11 15 15 N -0.86 -24.21 13.22 55.49 0.73 -23.48 15 16 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 15 17 H -0.27 -6.10 7.11 56.52 0.40 -5.69 15 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.06 0.77 8.08 -51.93 -0.42 0.35 15 22 H 0.07 1.25 6.77 -51.93 -0.35 0.90 15 23 H 0.12 1.47 8.06 -52.48 -0.42 1.04 15 24 H 0.12 1.67 7.60 -52.49 -0.40 1.27 15 25 H 0.41 3.22 9.11 45.56 0.42 3.64 15 26 H 0.15 3.62 4.61 -52.49 -0.24 3.38 15 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 LS Contribution 257.64 15.07 3.88 3.88 Total: -1.00 -30.94 257.64 -6.38 -37.32 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -1.24 Total: 3.07 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -1.76 Total: -18.16 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.73 Total: -23.48 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.84 Total: -18.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.13 Total: -0.51 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.94 -6.38 -37.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075441602.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.431 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds