Wall clock time and date at job start Mon Mar 30 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 O 1.42904 * 109.47396 * 64.99575 * 10 9 7 13 13 C 1.52997 * 109.47504 * 184.99949 * 10 9 7 14 14 S 1.81404 * 109.47382 * 180.02562 * 13 10 9 15 15 C 1.76199 * 102.99966 * 179.97438 * 14 13 10 16 16 C 1.38983 * 120.07851 * 359.72700 * 15 14 13 17 17 C 1.38082 * 119.91271 * 179.76515 * 16 15 14 18 18 C 1.38302 * 120.08710 * 0.48452 * 17 16 15 19 19 C 1.38305 * 120.15508 * 359.76602 * 18 17 16 20 20 C 1.38083 * 120.08113 * 0.02562 * 19 18 17 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 0.96708 * 113.99258 * 60.00195 * 12 10 9 25 25 H 1.09004 * 109.46881 * 300.00361 * 13 10 9 26 26 H 1.09002 * 109.47016 * 59.99741 * 13 10 9 27 27 H 1.08000 * 120.04099 * 359.97438 * 16 15 14 28 28 H 1.08005 * 119.95653 * 180.23402 * 17 16 15 29 29 H 1.07994 * 119.92040 * 179.74453 * 18 17 16 30 30 H 1.08002 * 119.96041 * 179.97438 * 19 18 17 31 31 H 1.08000 * 120.03768 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 8 2.9875 -3.6542 1.2216 13 6 1.4843 -4.9836 -0.1252 14 16 2.6630 -6.3625 -0.1244 15 6 1.6205 -7.7751 -0.2733 16 6 0.2417 -7.6183 -0.3505 17 6 -0.5717 -8.7274 -0.4721 18 6 -0.0168 -9.9938 -0.5070 19 6 1.3545 -10.1539 -0.4252 20 6 2.1745 -9.0491 -0.3078 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.4414 -3.7456 2.0144 25 1 0.8001 -5.0904 0.7167 26 1 0.9180 -4.9896 -1.0565 27 1 -0.1926 -6.6300 -0.3188 28 1 -1.6431 -8.6062 -0.5359 29 1 -0.6558 -10.8596 -0.5979 30 1 1.7845 -11.1442 -0.4523 31 1 3.2452 -9.1750 -0.2436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075614874.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:32 Heat of formation + Delta-G solvation = -41.135830 kcal Electronic energy + Delta-G solvation = -13876.083833 eV Core-core repulsion = 11441.017295 eV Total energy + Delta-G solvation = -2435.066538 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90985 -36.98266 -32.91889 -31.44067 -30.97033 -30.57374 -27.69706 -23.67733 -22.73310 -22.40698 -20.68156 -17.82775 -16.61552 -16.09194 -15.51544 -15.17346 -14.91802 -14.55283 -14.44574 -13.82170 -13.45733 -13.17823 -12.69998 -12.32196 -12.20254 -11.50243 -11.21128 -11.17457 -10.79478 -10.65153 -10.48842 -10.18181 -9.82499 -9.72557 -9.22037 -9.04755 -8.90678 -8.44684 -7.22666 -6.07262 -4.08806 1.18703 1.30931 1.71315 2.66884 3.30576 3.36833 3.42302 3.66652 4.42384 4.79895 4.87164 5.01798 5.07152 5.22881 5.30302 5.33099 5.41026 5.49581 5.68416 5.90480 5.93196 6.25806 6.31279 6.37236 6.42708 6.52584 6.84721 7.38872 7.50550 7.90294 8.27531 8.43117 8.97500 9.55506 11.04219 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.056519 B = 0.004548 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.286848 B = 6155.150195 C = 6544.708227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.001 3.999 10 C 0.127 3.873 11 H 0.096 0.904 12 O -0.552 6.552 13 C -0.137 4.137 14 S -0.104 6.104 15 C -0.082 4.082 16 C -0.137 4.137 17 C -0.100 4.100 18 C -0.136 4.136 19 C -0.104 4.104 20 C -0.107 4.107 21 H 0.261 0.739 22 H 0.022 0.978 23 H 0.026 0.974 24 H 0.366 0.634 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 -17.465 -0.434 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.080 0.920 9 C -0.038 4.038 10 C 0.066 3.934 11 H 0.113 0.887 12 O -0.356 6.356 13 C -0.285 4.285 14 S 0.143 5.857 15 C -0.195 4.195 16 C -0.161 4.161 17 C -0.120 4.120 18 C -0.157 4.157 19 C -0.124 4.124 20 C -0.131 4.131 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.044 0.956 24 H 0.212 0.788 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.493 -17.086 -0.754 17.168 hybrid contribution -1.682 0.748 0.194 1.851 sum -0.190 -16.338 -0.560 16.349 Atomic orbital electron populations 1.69957 1.06097 1.26790 1.50943 1.25014 0.94863 0.99406 0.95231 0.86525 0.79916 0.83073 0.78138 1.20646 1.21261 1.19698 1.21110 0.93382 0.90135 1.50370 0.92004 1.19759 0.93981 0.91894 0.98162 1.21920 0.94378 0.89532 0.87562 0.88658 1.86537 1.37491 1.96207 1.15355 1.24851 1.00953 0.96999 1.05732 1.85806 1.13547 0.95931 1.90387 1.22088 0.96730 0.98030 1.02681 1.21303 0.92316 0.99707 1.02789 1.21073 0.99644 0.92403 0.98887 1.21120 0.95156 0.97174 1.02230 1.21057 0.93674 0.98211 0.99436 1.20770 0.99909 0.90644 1.01814 0.92943 0.95992 0.95562 0.78753 0.89614 0.88911 0.85640 0.85900 0.86128 0.85841 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.18 8.88 -34.44 -0.31 -14.48 16 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 9 C 0.00 0.03 4.66 -27.88 -0.13 -0.10 16 10 C 0.13 2.53 2.96 -26.73 -0.08 2.45 16 11 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 12 O -0.55 -11.08 12.69 -35.23 -0.45 -11.53 16 13 C -0.14 -2.24 4.03 37.16 0.15 -2.09 16 14 S -0.10 -1.63 21.56 -107.50 -2.32 -3.95 16 15 C -0.08 -1.17 6.11 -39.04 -0.24 -1.40 16 16 C -0.14 -1.83 9.36 -39.36 -0.37 -2.20 16 17 C -0.10 -1.14 10.04 -39.61 -0.40 -1.54 16 18 C -0.14 -1.40 10.04 -39.53 -0.40 -1.80 16 19 C -0.10 -1.10 10.04 -39.61 -0.40 -1.49 16 20 C -0.11 -1.34 9.79 -39.37 -0.39 -1.72 16 21 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 22 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.37 6.25 9.05 45.56 0.41 6.67 16 25 H 0.09 1.33 7.74 -51.92 -0.40 0.93 16 26 H 0.09 1.46 7.76 -51.92 -0.40 1.06 16 27 H 0.13 1.65 5.88 -52.49 -0.31 1.34 16 28 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 282.90 15.07 4.26 4.26 Total: -1.00 -30.40 282.90 -8.64 -39.04 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.20 Total: 4.10 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.65 Total: -22.90 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.45 Total: -11.53 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.32 Total: -3.95 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.40 -8.64 -39.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075614874.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.095 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds