Wall clock time and date at job start Mon Mar 30 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 O 1.42904 * 109.47396 * 64.99575 * 10 9 7 13 13 C 1.52997 * 109.47504 * 184.99949 * 10 9 7 14 14 S 1.81404 * 109.47382 * 180.02562 * 13 10 9 15 15 C 1.76199 * 102.99966 * 179.97438 * 14 13 10 16 16 C 1.38983 * 120.07851 * 359.72700 * 15 14 13 17 17 C 1.38082 * 119.91271 * 179.76515 * 16 15 14 18 18 C 1.38302 * 120.08710 * 0.48452 * 17 16 15 19 19 C 1.38305 * 120.15508 * 359.76602 * 18 17 16 20 20 C 1.38083 * 120.08113 * 0.02562 * 19 18 17 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 0.96708 * 113.99258 * 60.00195 * 12 10 9 25 25 H 1.09004 * 109.46881 * 300.00361 * 13 10 9 26 26 H 1.09002 * 109.47016 * 59.99741 * 13 10 9 27 27 H 1.08000 * 120.04099 * 359.97438 * 16 15 14 28 28 H 1.08005 * 119.95653 * 180.23402 * 17 16 15 29 29 H 1.07994 * 119.92040 * 179.74453 * 18 17 16 30 30 H 1.08002 * 119.96041 * 179.97438 * 19 18 17 31 31 H 1.08000 * 120.03768 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 8 2.9875 -3.6542 1.2216 13 6 1.4843 -4.9836 -0.1252 14 16 2.6630 -6.3625 -0.1244 15 6 1.6205 -7.7751 -0.2733 16 6 0.2417 -7.6183 -0.3505 17 6 -0.5717 -8.7274 -0.4721 18 6 -0.0168 -9.9938 -0.5070 19 6 1.3545 -10.1539 -0.4252 20 6 2.1745 -9.0491 -0.3078 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.4414 -3.7456 2.0144 25 1 0.8001 -5.0904 0.7167 26 1 0.9180 -4.9896 -1.0565 27 1 -0.1926 -6.6300 -0.3188 28 1 -1.6431 -8.6062 -0.5359 29 1 -0.6558 -10.8596 -0.5979 30 1 1.7845 -11.1442 -0.4523 31 1 3.2452 -9.1750 -0.2436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075614874.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:31 Heat of formation + Delta-G solvation = -59.734478 kcal Electronic energy + Delta-G solvation = -13876.890331 eV Core-core repulsion = 11441.017295 eV Total energy + Delta-G solvation = -2435.873036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.80155 -38.64491 -35.00009 -32.76930 -31.89189 -31.83855 -29.51512 -25.50370 -23.70051 -23.45923 -22.32336 -19.00386 -18.40648 -17.36251 -17.02506 -16.77813 -16.35488 -15.88850 -15.58549 -15.17731 -14.44965 -14.31629 -14.29005 -13.93171 -13.62686 -13.08339 -12.78283 -12.54972 -12.51651 -12.28563 -12.09689 -11.81682 -11.29475 -11.07808 -10.71131 -10.63795 -10.59672 -9.94244 -8.38614 -8.22875 -6.31577 0.26621 0.41494 0.51128 1.40127 1.40568 1.46989 1.52614 2.40478 2.77596 3.10829 3.60371 3.75309 3.92190 3.96092 4.03050 4.24891 4.49869 4.53368 4.59743 4.66425 4.74148 4.80259 5.07016 5.32954 5.34122 5.45918 5.54675 5.56151 5.74330 6.00140 6.18568 6.80371 6.92442 7.36813 8.88598 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.056519 B = 0.004548 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.286848 B = 6155.150195 C = 6544.708227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.006 3.994 10 C 0.141 3.859 11 H 0.085 0.915 12 O -0.561 6.561 13 C -0.123 4.123 14 S -0.123 6.123 15 C -0.102 4.102 16 C -0.155 4.155 17 C -0.107 4.107 18 C -0.129 4.129 19 C -0.101 4.101 20 C -0.118 4.118 21 H 0.264 0.736 22 H 0.008 0.992 23 H 0.009 0.991 24 H 0.379 0.621 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.144 0.856 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 -19.073 -0.467 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.073 0.927 9 C -0.033 4.033 10 C 0.080 3.920 11 H 0.103 0.897 12 O -0.367 6.367 13 C -0.272 4.272 14 S 0.123 5.877 15 C -0.215 4.215 16 C -0.179 4.179 17 C -0.126 4.126 18 C -0.149 4.149 19 C -0.121 4.121 20 C -0.142 4.142 21 H 0.073 0.927 22 H 0.026 0.974 23 H 0.027 0.973 24 H 0.227 0.773 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.137 0.863 28 H 0.162 0.838 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.470 -18.711 -0.783 18.785 hybrid contribution -1.722 1.100 0.207 2.054 sum -0.251 -17.611 -0.576 17.622 Atomic orbital electron populations 1.70060 1.07500 1.27797 1.51769 1.25852 0.95723 1.02988 0.94808 0.85502 0.78639 0.78796 0.78464 1.19804 1.20601 1.19285 1.21461 0.93330 0.91863 1.50256 0.92703 1.19632 0.94271 0.92875 0.96513 1.21516 0.93120 0.89971 0.87395 0.89738 1.86494 1.38061 1.96275 1.15901 1.24484 1.00616 0.95824 1.06235 1.85709 1.13960 0.96703 1.91329 1.22087 0.96792 0.97602 1.05046 1.21406 0.92354 1.00348 1.03762 1.21397 1.00651 0.92320 0.98270 1.21568 0.95567 0.97758 1.00052 1.21458 0.93773 0.98957 0.97910 1.21012 1.00760 0.90554 1.01848 0.92719 0.97406 0.97279 0.77315 0.88888 0.88627 0.86322 0.83834 0.82861 0.82669 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.53 -29.92 8.88 25.60 0.23 -29.69 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.01 0.31 4.66 29.85 0.14 0.45 16 10 C 0.14 5.73 2.96 30.59 0.09 5.82 16 11 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 12 O -0.56 -22.71 12.69 -148.98 -1.89 -24.60 16 13 C -0.12 -4.10 4.03 71.98 0.29 -3.81 16 14 S -0.12 -3.85 21.56 -56.49 -1.22 -5.07 16 15 C -0.10 -2.83 6.11 22.62 0.14 -2.69 16 16 C -0.15 -4.00 9.36 22.41 0.21 -3.79 16 17 C -0.11 -2.18 10.04 22.25 0.22 -1.96 16 18 C -0.13 -2.20 10.04 22.30 0.22 -1.97 16 19 C -0.10 -1.81 10.04 22.25 0.22 -1.59 16 20 C -0.12 -2.74 9.79 22.41 0.22 -2.52 16 21 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 22 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 23 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.38 13.00 9.05 -74.05 -0.67 12.33 16 25 H 0.09 2.92 7.74 -2.39 -0.02 2.90 16 26 H 0.10 3.09 7.76 -2.39 -0.02 3.07 16 27 H 0.12 3.12 5.88 -2.91 -0.02 3.11 16 28 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -64.94 282.90 2.10 -62.84 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.45 Total: 16.41 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 2.45 Total: -41.05 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.28 Total: -54.99 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -1.89 Total: -24.60 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.22 Total: -5.07 kcal Total: -64.94 2.10 -62.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075614874.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.104 kcal (2) G-P(sol) polarization free energy of solvation -64.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds