Wall clock time and date at job start Mon Mar 30 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 O 1.42907 * 109.46675 * 294.99903 * 10 9 7 13 13 C 1.52996 * 109.47153 * 175.00123 * 10 9 7 14 14 S 1.81401 * 109.47073 * 185.00005 * 13 10 9 15 15 C 1.76197 * 103.00128 * 179.97438 * 14 13 10 16 16 C 1.38978 * 120.08063 * 359.72712 * 15 14 13 17 17 C 1.38079 * 119.92149 * 179.76771 * 16 15 14 18 18 C 1.38305 * 120.07839 * 0.48152 * 17 16 15 19 19 C 1.38304 * 120.16106 * 359.77153 * 18 17 16 20 20 C 1.38083 * 120.07895 * 359.97438 * 19 18 17 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 0.96700 * 114.00238 * 299.99679 * 12 10 9 25 25 H 1.08997 * 109.47217 * 304.99517 * 13 10 9 26 26 H 1.08996 * 109.47400 * 64.99594 * 13 10 9 27 27 H 1.08003 * 120.03378 * 359.97438 * 16 15 14 28 28 H 1.07994 * 119.96160 * 180.22812 * 17 16 15 29 29 H 1.07999 * 119.92193 * 179.74776 * 18 17 16 30 30 H 1.07999 * 119.96453 * 179.97438 * 19 18 17 31 31 H 1.08008 * 120.03963 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 8 2.9875 -3.6487 -1.2315 13 6 1.4842 -4.9841 0.1093 14 16 2.6671 -6.3519 0.2520 15 6 1.6242 -7.7664 0.3787 16 6 0.2426 -7.6173 0.3573 17 6 -0.5716 -8.7285 0.4520 18 6 -0.0138 -9.9878 0.5780 19 6 1.3606 -10.1395 0.6049 20 6 2.1811 -9.0333 0.5054 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.4415 -3.7366 -2.0247 25 1 0.8493 -4.9590 0.9949 26 1 0.8661 -5.1291 -0.7767 27 1 -0.1936 -6.6338 0.2634 28 1 -1.6452 -8.6137 0.4318 29 1 -0.6530 -10.8548 0.6560 30 1 1.7928 -11.1243 0.7038 31 1 3.2544 -9.1525 0.5269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075614878.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:34 Heat of formation + Delta-G solvation = -60.107302 kcal Electronic energy + Delta-G solvation = -13873.352006 eV Core-core repulsion = 11437.462803 eV Total energy + Delta-G solvation = -2435.889202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80352 -38.64989 -35.00148 -32.77188 -31.89845 -31.83943 -29.51744 -25.50737 -23.70363 -23.46029 -22.33070 -19.00807 -18.40990 -17.35878 -17.05078 -16.77047 -16.35582 -15.88683 -15.57741 -15.17729 -14.46724 -14.30723 -14.29565 -13.95064 -13.62416 -13.09256 -12.76208 -12.56022 -12.53823 -12.28787 -12.09456 -11.82213 -11.28024 -11.08654 -10.71475 -10.63781 -10.60325 -9.94367 -8.39307 -8.23141 -6.31715 0.26463 0.41387 0.50942 1.38913 1.40392 1.46267 1.53742 2.40370 2.77482 3.10571 3.58804 3.74910 3.92299 3.97043 4.02968 4.24802 4.49299 4.52935 4.59429 4.65629 4.74578 4.80101 5.06921 5.32917 5.33991 5.45793 5.54517 5.56038 5.74361 6.00007 6.18454 6.80433 6.92628 7.36718 8.88525 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.056078 B = 0.004545 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.185682 B = 6158.582396 C = 6536.763916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.006 3.994 10 C 0.141 3.859 11 H 0.084 0.916 12 O -0.562 6.562 13 C -0.122 4.122 14 S -0.126 6.126 15 C -0.102 4.102 16 C -0.155 4.155 17 C -0.107 4.107 18 C -0.129 4.129 19 C -0.101 4.101 20 C -0.118 4.118 21 H 0.264 0.736 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.379 0.621 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.144 0.856 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 -19.071 0.541 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.073 0.927 9 C -0.033 4.033 10 C 0.080 3.920 11 H 0.102 0.898 12 O -0.368 6.368 13 C -0.270 4.270 14 S 0.119 5.881 15 C -0.214 4.214 16 C -0.179 4.179 17 C -0.126 4.126 18 C -0.149 4.149 19 C -0.121 4.121 20 C -0.142 4.142 21 H 0.073 0.927 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.227 0.773 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.137 0.863 28 H 0.162 0.838 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.429 -18.706 0.947 18.784 hybrid contribution -1.719 1.094 -0.324 2.063 sum -0.290 -17.612 0.622 17.625 Atomic orbital electron populations 1.70069 1.07488 1.27731 1.51837 1.25854 0.95727 1.02989 0.94820 0.85448 0.78959 0.79113 0.77840 1.19191 1.20300 1.20282 1.21491 0.93322 0.91860 1.50141 0.92726 1.19638 0.94269 0.92868 0.96546 1.21507 0.93116 0.89990 0.87366 0.89802 1.86492 1.38112 1.96329 1.15865 1.24473 1.00510 0.95880 1.06174 1.85694 1.13838 0.97439 1.91110 1.22068 0.96730 0.97567 1.05073 1.21405 0.92292 1.00351 1.03803 1.21395 1.00667 0.92310 0.98248 1.21571 0.95532 0.97843 0.99984 1.21457 0.93769 0.98893 0.97976 1.21017 1.00751 0.90643 1.01772 0.92721 0.97262 0.97353 0.77276 0.88681 0.88741 0.86305 0.83810 0.82848 0.82664 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.53 -29.87 8.88 25.60 0.23 -29.65 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.01 0.29 4.66 29.85 0.14 0.43 16 10 C 0.14 5.75 2.91 30.59 0.09 5.84 16 11 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 12 O -0.56 -22.71 12.85 -148.98 -1.91 -24.63 16 13 C -0.12 -4.06 4.00 71.98 0.29 -3.77 16 14 S -0.13 -3.99 21.70 -56.49 -1.23 -5.21 16 15 C -0.10 -2.81 6.11 22.62 0.14 -2.67 16 16 C -0.15 -4.00 9.36 22.41 0.21 -3.79 16 17 C -0.11 -2.17 10.04 22.25 0.22 -1.95 16 18 C -0.13 -2.19 10.04 22.30 0.22 -1.97 16 19 C -0.10 -1.81 10.04 22.25 0.22 -1.59 16 20 C -0.12 -2.74 9.79 22.41 0.22 -2.52 16 21 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 22 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 23 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.38 12.91 9.05 -74.06 -0.67 12.24 16 25 H 0.09 3.09 7.73 -2.39 -0.02 3.07 16 26 H 0.09 2.94 7.76 -2.39 -0.02 2.92 16 27 H 0.12 3.12 5.88 -2.91 -0.02 3.10 16 28 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 30 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -65.07 283.12 2.07 -63.01 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.45 Total: 16.22 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 2.44 Total: -40.94 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.28 Total: -54.94 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -1.91 Total: -24.63 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -3.99 SS G_CDS: -1.23 Total: -5.21 kcal Total: -65.07 2.07 -63.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075614878.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.899 kcal (2) G-P(sol) polarization free energy of solvation -65.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds