Wall clock time and date at job start Mon Mar 30 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00244 * 2 1 4 4 H 1.48496 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47180 * 300.00408 * 3 2 1 6 6 H 1.48501 * 109.47005 * 59.99869 * 3 2 1 7 7 C 1.37880 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99647 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.36055 * 126.35666 * 265.02875 * 10 9 7 12 12 N 1.30097 * 110.09150 * 179.97438 * 11 10 9 13 13 C 1.35827 * 109.65836 * 359.97438 * 12 11 10 14 14 C 1.39787 * 133.54154 * 180.02562 * 13 12 11 15 15 C 1.36594 * 119.95214 * 180.02562 * 14 13 12 16 16 C 1.38943 * 120.66385 * 359.97438 * 15 14 13 17 17 F 1.35101 * 119.81574 * 179.97438 * 16 15 14 18 18 C 1.38226 * 120.37397 * 0.02562 * 16 15 14 19 19 F 1.35101 * 120.18288 * 180.02562 * 18 16 15 20 20 C 1.38140 * 126.35749 * 84.71215 * 10 9 7 21 21 H 0.96998 * 119.99712 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47541 * 60.00379 * 9 7 2 23 23 H 1.08998 * 109.47222 * 300.00030 * 9 7 2 24 24 H 1.08008 * 124.95476 * 359.95599 * 11 10 9 25 25 H 1.07995 * 120.02139 * 0.02562 * 14 13 12 26 26 H 1.07995 * 119.66878 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6549 -4.2875 -1.0921 12 7 3.4909 -5.2159 -0.7292 13 6 3.6331 -5.2001 0.6215 14 6 4.3878 -5.9606 1.5193 15 6 4.3194 -5.7010 2.8586 16 6 3.5051 -4.6846 3.3427 17 9 3.4501 -4.4429 4.6708 18 6 2.7502 -3.9199 2.4733 19 9 1.9601 -2.9322 2.9481 20 6 2.8131 -4.1686 1.1072 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.3621 -4.0825 -2.1113 25 1 5.0245 -6.7529 1.1543 26 1 4.9047 -6.2912 3.5481 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075935157.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:28 Heat of formation + Delta-G solvation = -23.498024 kcal Electronic energy + Delta-G solvation = -16397.165600 eV Core-core repulsion = 13305.483165 eV Total energy + Delta-G solvation = -3091.682435 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.98322 -48.01525 -41.61637 -36.75891 -34.13959 -32.38162 -29.94190 -28.70675 -27.32456 -23.58198 -23.00914 -22.08296 -20.26231 -17.64091 -17.26070 -16.98929 -16.74730 -15.92157 -15.20635 -15.04195 -14.67490 -14.38161 -14.17665 -14.02584 -13.64231 -12.73797 -12.61188 -12.23491 -11.92052 -11.38188 -11.26904 -10.96390 -10.88384 -10.42455 -10.20351 -9.73841 -9.43909 -8.76465 -8.05453 -7.60412 -6.39057 -4.48397 1.00653 1.59248 3.05843 3.13657 3.22336 3.25269 3.31763 3.92520 4.17778 4.29073 4.53969 4.71666 4.96102 4.97328 5.17922 5.52018 5.55449 5.91414 6.06128 6.21384 6.37051 6.69917 6.80931 7.01375 7.16312 7.49340 7.69683 7.71158 8.22346 8.56452 9.20152 10.68987 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.026533 B = 0.008789 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.029371 B = 3184.984216 C = 3802.530295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.232 3.768 10 N -0.446 5.446 11 C 0.272 3.728 12 N -0.513 5.513 13 C 0.056 3.944 14 C -0.053 4.053 15 C -0.142 4.142 16 C 0.056 3.944 17 F -0.133 7.133 18 C 0.097 3.903 19 F -0.118 7.118 20 C 0.035 3.965 21 H 0.269 0.731 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.214 0.786 25 H 0.139 0.861 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.139 -8.611 2.215 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.114 3.886 10 N -0.129 5.129 11 C -0.014 4.014 12 N -0.233 5.233 13 C -0.066 4.066 14 C -0.072 4.072 15 C -0.164 4.164 16 C 0.034 3.966 17 F -0.112 7.112 18 C 0.074 3.926 19 F -0.096 7.096 20 C -0.080 4.080 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.230 0.770 25 H 0.157 0.843 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.194 -8.833 1.711 10.389 hybrid contribution -0.318 1.934 0.786 2.112 sum 4.876 -6.899 2.496 8.809 Atomic orbital electron populations 1.69918 1.06103 1.27851 1.48510 1.24919 0.94974 0.99603 0.93954 0.86285 0.80046 0.82338 0.77988 1.19491 1.20485 1.20463 1.21263 0.93664 0.89535 1.53923 0.91659 1.19970 0.86778 0.81433 1.00460 1.46300 1.34857 1.27880 1.03856 1.25345 0.92794 0.89120 0.94120 1.70482 1.20128 1.22904 1.09814 1.19027 0.99716 0.96766 0.91078 1.19738 0.98243 0.98922 0.90335 1.20327 1.01358 0.98650 0.96028 1.17101 1.02485 0.99875 0.77187 1.91478 1.95544 1.94011 1.30144 1.16481 0.96546 0.90812 0.88713 1.91573 1.71201 1.58489 1.88348 1.18614 1.01500 0.99529 0.88345 0.92104 0.92461 0.92909 0.76995 0.84310 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 13.29 55.43 0.74 -23.64 15 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 3 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 7 C -0.55 -14.41 9.39 -34.44 -0.32 -14.73 15 8 H 0.07 1.78 7.81 -52.49 -0.41 1.37 15 9 C 0.23 5.53 5.64 -5.19 -0.03 5.50 15 10 N -0.45 -9.44 2.79 -117.02 -0.33 -9.77 15 11 C 0.27 4.94 12.50 -89.78 -1.12 3.81 15 12 N -0.51 -9.55 11.27 -12.04 -0.14 -9.69 15 13 C 0.06 1.04 7.23 -84.69 -0.61 0.43 15 14 C -0.05 -0.78 10.05 -39.60 -0.40 -1.18 15 15 C -0.14 -1.99 9.94 -39.91 -0.40 -2.39 15 16 C 0.06 0.96 7.30 -39.32 -0.29 0.67 15 17 F -0.13 -2.27 17.17 2.25 0.04 -2.24 15 18 C 0.10 1.99 7.32 -39.31 -0.29 1.70 15 19 F -0.12 -2.68 16.19 2.25 0.04 -2.64 15 20 C 0.04 0.73 6.88 -83.91 -0.58 0.15 15 21 H 0.27 6.97 8.31 -40.82 -0.34 6.64 15 22 H 0.06 1.34 8.13 -51.93 -0.42 0.92 15 23 H 0.05 1.37 7.44 -51.93 -0.39 0.98 15 24 H 0.21 2.98 8.06 -52.48 -0.42 2.56 15 25 H 0.14 1.63 8.06 -52.49 -0.42 1.20 15 26 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 LS Contribution 249.13 15.07 3.75 3.75 Total: -1.00 -28.96 249.13 -6.67 -35.63 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -1.62 Total: -2.84 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -4.13 Total: -4.27 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.27 Total: -43.10 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.96 -6.67 -35.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075935157.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.136 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds