Wall clock time and date at job start Mon Mar 30 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00244 * 2 1 4 4 H 1.48496 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47180 * 300.00408 * 3 2 1 6 6 H 1.48501 * 109.47005 * 59.99869 * 3 2 1 7 7 C 1.37880 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99647 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.36055 * 126.35666 * 265.02875 * 10 9 7 12 12 N 1.30097 * 110.09150 * 179.97438 * 11 10 9 13 13 C 1.35827 * 109.65836 * 359.97438 * 12 11 10 14 14 C 1.39787 * 133.54154 * 180.02562 * 13 12 11 15 15 C 1.36594 * 119.95214 * 180.02562 * 14 13 12 16 16 C 1.38943 * 120.66385 * 359.97438 * 15 14 13 17 17 F 1.35101 * 119.81574 * 179.97438 * 16 15 14 18 18 C 1.38226 * 120.37397 * 0.02562 * 16 15 14 19 19 F 1.35101 * 120.18288 * 180.02562 * 18 16 15 20 20 C 1.38140 * 126.35749 * 84.71215 * 10 9 7 21 21 H 0.96998 * 119.99712 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47541 * 60.00379 * 9 7 2 23 23 H 1.08998 * 109.47222 * 300.00030 * 9 7 2 24 24 H 1.08008 * 124.95476 * 359.95599 * 11 10 9 25 25 H 1.07995 * 120.02139 * 0.02562 * 14 13 12 26 26 H 1.07995 * 119.66878 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6549 -4.2875 -1.0921 12 7 3.4909 -5.2159 -0.7292 13 6 3.6331 -5.2001 0.6215 14 6 4.3878 -5.9606 1.5193 15 6 4.3194 -5.7010 2.8586 16 6 3.5051 -4.6846 3.3427 17 9 3.4501 -4.4429 4.6708 18 6 2.7502 -3.9199 2.4733 19 9 1.9601 -2.9322 2.9481 20 6 2.8131 -4.1686 1.1072 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.3621 -4.0825 -2.1113 25 1 5.0245 -6.7529 1.1543 26 1 4.9047 -6.2912 3.5481 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075935157.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:27 Heat of formation + Delta-G solvation = -39.080973 kcal Electronic energy + Delta-G solvation = -16397.841327 eV Core-core repulsion = 13305.483165 eV Total energy + Delta-G solvation = -3092.358162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.46152 -49.53420 -43.06302 -38.12287 -35.92276 -34.16958 -31.39206 -30.08394 -29.14500 -25.42076 -24.40310 -23.51775 -21.74983 -19.11155 -18.96118 -18.60909 -18.36044 -17.44628 -16.74409 -16.63419 -16.20446 -15.94879 -15.76335 -15.41730 -15.16541 -14.46738 -13.95962 -13.92815 -13.58907 -13.11666 -12.81939 -12.63237 -12.41514 -12.31421 -11.88943 -11.24965 -11.14815 -10.78593 -9.47663 -9.05456 -8.40923 -6.58239 -0.37827 0.25960 1.32436 1.34556 1.45541 1.62844 1.79194 2.28825 2.57671 2.85622 2.91286 3.17571 3.36669 3.68554 3.81854 4.08830 4.25545 4.49083 4.76827 4.85743 4.87481 5.06804 5.30532 5.46516 5.49927 5.71390 5.72094 6.11958 6.51779 6.77230 7.13979 8.66364 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.026533 B = 0.008789 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.029371 B = 3184.984216 C = 3802.530295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.277 1.277 7 C -0.557 4.557 8 H 0.051 0.949 9 C 0.250 3.750 10 N -0.466 5.466 11 C 0.271 3.729 12 N -0.515 5.515 13 C 0.044 3.956 14 C -0.035 4.035 15 C -0.122 4.122 16 C 0.067 3.933 17 F -0.133 7.133 18 C 0.047 3.953 19 F -0.145 7.145 20 C 0.004 3.996 21 H 0.274 0.726 22 H 0.058 0.942 23 H 0.022 0.978 24 H 0.246 0.754 25 H 0.182 0.818 26 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.096 -9.853 2.197 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.070 0.930 9 C 0.130 3.870 10 N -0.150 5.150 11 C -0.014 4.014 12 N -0.235 5.235 13 C -0.077 4.077 14 C -0.055 4.055 15 C -0.142 4.142 16 C 0.046 3.954 17 F -0.111 7.111 18 C 0.024 3.976 19 F -0.124 7.124 20 C -0.109 4.109 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.040 0.960 24 H 0.262 0.738 25 H 0.199 0.801 26 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 7.171 -10.109 1.698 12.510 hybrid contribution -0.864 2.192 0.855 2.506 sum 6.307 -7.918 2.553 10.440 Atomic orbital electron populations 1.69997 1.07313 1.28866 1.49185 1.25709 0.95763 1.02733 0.93478 0.85352 0.78547 0.78502 0.78404 1.19646 1.18987 1.20288 1.21427 0.93123 0.91044 1.53943 0.93037 1.19456 0.86852 0.81832 0.98817 1.46146 1.35582 1.28134 1.05184 1.26063 0.92180 0.88368 0.94770 1.70514 1.20178 1.22865 1.09898 1.19581 0.99950 0.96779 0.91413 1.20281 0.96872 0.98440 0.89867 1.20838 0.99787 0.97038 0.96571 1.17454 1.01630 0.99587 0.76777 1.91481 1.95462 1.94050 1.30125 1.17011 0.98728 0.92204 0.89627 1.91486 1.72363 1.59939 1.88632 1.19014 1.02666 1.00770 0.88469 0.91716 0.92398 0.96029 0.73789 0.80099 0.78892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.32 13.29 21.45 0.28 -51.04 15 2 C 0.02 1.34 5.46 84.66 0.46 1.80 15 3 Si 0.97 42.79 29.54 68.60 2.03 44.82 15 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 7 C -0.56 -30.27 9.39 25.60 0.24 -30.03 15 8 H 0.05 2.88 7.81 -2.91 -0.02 2.85 15 9 C 0.25 12.46 5.64 85.63 0.48 12.94 15 10 N -0.47 -20.17 2.79 -524.14 -1.46 -21.64 15 11 C 0.27 9.69 12.50 180.05 2.25 11.94 15 12 N -0.51 -18.34 11.27 -192.01 -2.16 -20.51 15 13 C 0.04 1.56 7.23 39.44 0.29 1.84 15 14 C -0.04 -0.90 10.05 22.26 0.22 -0.68 15 15 C -0.12 -2.90 9.94 22.05 0.22 -2.68 15 16 C 0.07 2.22 7.30 22.44 0.16 2.38 15 17 F -0.13 -4.35 17.17 44.97 0.77 -3.57 15 18 C 0.05 1.96 7.32 22.45 0.16 2.13 15 19 F -0.15 -7.00 16.19 44.97 0.73 -6.28 15 20 C 0.00 0.17 6.88 38.87 0.27 0.44 15 21 H 0.27 14.34 8.31 -92.71 -0.77 13.57 15 22 H 0.06 2.82 8.13 -2.39 -0.02 2.80 15 23 H 0.02 1.20 7.44 -2.39 -0.02 1.18 15 24 H 0.25 6.58 8.06 -2.91 -0.02 6.56 15 25 H 0.18 3.14 8.06 -2.91 -0.02 3.12 15 26 H 0.19 2.76 8.06 -2.91 -0.02 2.73 15 Total: -1.00 -64.50 249.13 6.16 -58.34 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 1.22 Total: -0.21 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 4.76 Total: 0.08 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -3.34 Total: -93.18 kcal Atomic # 9 Polarization: -11.35 SS G_CDS: 1.50 Total: -9.85 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -64.50 6.16 -58.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075935157.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.256 kcal (2) G-P(sol) polarization free energy of solvation -64.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds