Wall clock time and date at job start Mon Mar 30 2020 05:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31492 * 1 3 3 Si 1.86795 * 120.00162 * 2 1 4 4 H 1.48507 * 109.46903 * 274.58396 * 3 2 1 5 5 H 1.48492 * 109.47493 * 34.58393 * 3 2 1 6 6 H 1.48502 * 109.47181 * 154.58802 * 3 2 1 7 7 C 1.38792 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00423 * 159.06440 * 7 2 1 9 9 N 1.37143 * 120.00341 * 339.34000 * 7 2 1 10 10 C 1.39123 * 125.81499 * 139.88713 * 9 7 2 11 11 C 1.39735 * 106.80874 * 179.90531 * 10 9 7 12 12 C 1.38641 * 119.86563 * 180.14519 * 11 10 9 13 13 C 1.38166 * 119.90860 * 0.25225 * 12 11 10 14 14 C 1.38423 * 120.32628 * 0.02562 * 13 12 11 15 15 C 1.38319 * 120.26850 * 359.97438 * 14 13 12 16 16 F 1.35096 * 120.10295 * 179.97438 * 15 14 13 17 17 N 1.39214 * 106.77511 * 0.35635 * 11 10 9 18 18 H 0.97003 * 125.81904 * 179.81212 * 17 11 10 19 19 C 1.34632 * 108.35344 * 359.77613 * 17 11 10 20 20 S 1.71203 * 125.15647 * 180.02562 * 19 17 11 21 21 H 0.97003 * 119.99458 * 359.97438 * 1 2 3 22 22 H 1.08010 * 120.04372 * 180.22423 * 12 11 10 23 23 H 1.08001 * 119.83665 * 179.97438 * 13 12 11 24 24 H 1.08001 * 119.86336 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 2.3995 2.1023 -1.3957 5 1 1.4983 2.6227 0.7946 6 1 3.5916 1.4140 0.6008 7 6 2.0088 -1.2020 0.0005 8 1 3.0353 -1.2332 -0.3336 9 7 1.3892 -2.3513 0.4201 10 6 1.5225 -3.6075 -0.1630 11 6 0.7252 -4.4836 0.5782 12 6 0.6612 -5.8233 0.2272 13 6 1.3897 -6.2887 -0.8506 14 6 2.1846 -5.4237 -1.5827 15 6 2.2562 -4.0852 -1.2417 16 9 3.0336 -3.2440 -1.9583 17 7 0.1264 -3.7292 1.5834 18 1 -0.4865 -4.0647 2.2563 19 6 0.5438 -2.4549 1.4628 20 16 0.0716 -1.1623 2.4813 21 1 -0.4849 0.8401 0.0004 22 1 0.0430 -6.5024 0.7959 23 1 1.3393 -7.3326 -1.1227 24 1 2.7506 -5.7955 -2.4241 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075952348.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:06 Heat of formation + Delta-G solvation = 23.983474 kcal Electronic energy + Delta-G solvation = -14583.839363 eV Core-core repulsion = 11924.595962 eV Total energy + Delta-G solvation = -2659.243401 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.027 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.32735 -41.54114 -36.93830 -34.70183 -32.16051 -29.43581 -29.26324 -25.93761 -23.01556 -22.41981 -21.68686 -18.71996 -17.33406 -17.02461 -16.16844 -15.62227 -15.17563 -14.97076 -14.83989 -14.23578 -14.11329 -13.64855 -12.76483 -12.06158 -11.73003 -11.65979 -11.37101 -11.16015 -11.10579 -10.50673 -10.13339 -10.00217 -9.14059 -8.54663 -7.90857 -6.92710 -6.26585 -5.68009 -4.59017 1.27929 1.65914 2.91084 3.11949 3.20123 3.26577 3.28562 3.78657 3.92714 4.04137 4.37184 4.64813 4.86055 5.04792 5.21774 5.47583 5.67195 5.86267 6.11514 6.30971 6.51717 6.64863 6.97648 7.12175 7.56650 7.65998 8.15564 8.61946 8.93684 10.28029 Molecular weight = 238.03amu Principal moments of inertia in cm(-1) A = 0.028358 B = 0.011590 C = 0.008592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.142851 B = 2415.246907 C = 3258.060176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.062 3.938 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.335 4.335 8 H 0.116 0.884 9 N -0.253 5.253 10 C 0.015 3.985 11 C 0.094 3.906 12 C -0.124 4.124 13 C -0.095 4.095 14 C -0.171 4.171 15 C 0.138 3.862 16 F -0.130 7.130 17 N -0.587 5.587 18 H 0.432 0.568 19 C 0.404 3.596 20 S -0.641 6.641 21 H 0.285 0.715 22 H 0.127 0.873 23 H 0.133 0.867 24 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.628 -10.422 -3.818 11.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.161 4.161 3 Si 0.767 3.233 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.464 4.464 8 H 0.134 0.866 9 N 0.074 4.926 10 C -0.095 4.095 11 C -0.018 4.018 12 C -0.147 4.147 13 C -0.116 4.116 14 C -0.192 4.192 15 C 0.114 3.886 16 F -0.109 7.109 17 N -0.205 5.205 18 H 0.273 0.727 19 C 0.054 3.946 20 S -0.504 6.504 21 H 0.096 0.904 22 H 0.145 0.855 23 H 0.151 0.849 24 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.154 -9.135 -3.117 9.889 hybrid contribution 0.236 0.018 -0.375 0.443 sum 2.390 -9.116 -3.492 10.050 Atomic orbital electron populations 1.70045 1.07246 1.30162 1.29067 1.25300 0.95096 1.00470 0.95206 0.85663 0.79952 0.79747 0.77986 1.20223 1.19692 1.18642 1.19706 0.97542 0.82478 1.46710 0.86607 1.40581 1.30452 1.05127 1.16438 1.18876 1.03557 0.88835 0.98251 1.18150 0.97915 0.93139 0.92593 1.19935 1.03596 0.91322 0.99879 1.20474 0.96927 0.99266 0.94919 1.20698 1.04520 0.90611 1.03420 1.16632 0.93487 0.87776 0.90656 1.91490 1.72110 1.70947 1.76312 1.42631 1.42861 1.06442 1.28552 0.72691 1.21910 0.95302 0.87379 0.90054 1.92073 1.75802 1.36919 1.45595 0.90353 0.85479 0.84874 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.78 10.96 55.49 0.61 -20.17 14 2 C 0.06 1.66 4.24 -17.49 -0.07 1.58 14 3 Si 0.94 20.96 29.60 -169.99 -5.03 15.92 14 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 14 5 H -0.27 -6.16 7.11 56.52 0.40 -5.75 14 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 14 7 C -0.33 -8.97 9.17 -14.97 -0.14 -9.10 14 8 H 0.12 2.96 7.65 -52.49 -0.40 2.55 14 9 N -0.25 -6.56 2.78 -60.79 -0.17 -6.73 14 10 C 0.02 0.34 6.77 -83.73 -0.57 -0.23 14 11 C 0.09 1.80 7.26 -83.80 -0.61 1.19 14 12 C -0.12 -1.77 10.07 -39.46 -0.40 -2.17 14 13 C -0.09 -1.19 10.03 -39.54 -0.40 -1.59 14 14 C -0.17 -2.48 10.01 -39.48 -0.40 -2.88 14 15 C 0.14 2.65 7.32 -39.29 -0.29 2.36 14 16 F -0.13 -2.62 16.45 2.25 0.04 -2.58 14 17 N -0.59 -12.16 6.15 -11.48 -0.07 -12.23 14 18 H 0.43 7.48 8.96 -40.82 -0.37 7.11 14 19 C 0.40 10.50 7.39 -87.17 -0.64 9.85 14 20 S -0.64 -18.47 27.44 -107.50 -2.95 -21.42 14 21 H 0.29 7.59 8.31 -40.82 -0.34 7.25 14 22 H 0.13 1.39 8.06 -52.48 -0.42 0.97 14 23 H 0.13 1.16 8.06 -52.49 -0.42 0.74 14 24 H 0.14 1.56 8.06 -52.49 -0.42 1.13 14 LS Contribution 236.05 15.07 3.56 3.56 Total: -1.00 -32.70 236.05 -8.70 -41.40 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -1.17 Total: 3.24 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.51 Total: -0.98 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.37 Total: -39.14 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.92 kcal Atomic # 16 Polarization: -18.47 SS G_CDS: -2.95 Total: -21.42 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.70 -8.70 -41.40 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075952348.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.380 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds