Wall clock time and date at job start Mon Mar 30 2020 05:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31492 * 1 3 3 Si 1.86795 * 120.00162 * 2 1 4 4 H 1.48507 * 109.46903 * 274.58396 * 3 2 1 5 5 H 1.48492 * 109.47493 * 34.58393 * 3 2 1 6 6 H 1.48502 * 109.47181 * 154.58802 * 3 2 1 7 7 C 1.38792 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00423 * 159.06440 * 7 2 1 9 9 N 1.37143 * 120.00341 * 339.34000 * 7 2 1 10 10 C 1.39123 * 125.81499 * 139.88713 * 9 7 2 11 11 C 1.39735 * 106.80874 * 179.90531 * 10 9 7 12 12 C 1.38641 * 119.86563 * 180.14519 * 11 10 9 13 13 C 1.38166 * 119.90860 * 0.25225 * 12 11 10 14 14 C 1.38423 * 120.32628 * 0.02562 * 13 12 11 15 15 C 1.38319 * 120.26850 * 359.97438 * 14 13 12 16 16 F 1.35096 * 120.10295 * 179.97438 * 15 14 13 17 17 N 1.39214 * 106.77511 * 0.35635 * 11 10 9 18 18 H 0.97003 * 125.81904 * 179.81212 * 17 11 10 19 19 C 1.34632 * 108.35344 * 359.77613 * 17 11 10 20 20 S 1.71203 * 125.15647 * 180.02562 * 19 17 11 21 21 H 0.97003 * 119.99458 * 359.97438 * 1 2 3 22 22 H 1.08010 * 120.04372 * 180.22423 * 12 11 10 23 23 H 1.08001 * 119.83665 * 179.97438 * 13 12 11 24 24 H 1.08001 * 119.86336 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 2.3995 2.1023 -1.3957 5 1 1.4983 2.6227 0.7946 6 1 3.5916 1.4140 0.6008 7 6 2.0088 -1.2020 0.0005 8 1 3.0353 -1.2332 -0.3336 9 7 1.3892 -2.3513 0.4201 10 6 1.5225 -3.6075 -0.1630 11 6 0.7252 -4.4836 0.5782 12 6 0.6612 -5.8233 0.2272 13 6 1.3897 -6.2887 -0.8506 14 6 2.1846 -5.4237 -1.5827 15 6 2.2562 -4.0852 -1.2417 16 9 3.0336 -3.2440 -1.9583 17 7 0.1264 -3.7292 1.5834 18 1 -0.4865 -4.0647 2.2563 19 6 0.5438 -2.4549 1.4628 20 16 0.0716 -1.1623 2.4813 21 1 -0.4849 0.8401 0.0004 22 1 0.0430 -6.5024 0.7959 23 1 1.3393 -7.3326 -1.1227 24 1 2.7506 -5.7955 -2.4241 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075952348.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:06 Heat of formation + Delta-G solvation = 2.839168 kcal Electronic energy + Delta-G solvation = -14584.756249 eV Core-core repulsion = 11924.595962 eV Total energy + Delta-G solvation = -2660.160287 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.027 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.81273 -43.21858 -38.35748 -36.47808 -34.02785 -30.81265 -30.77313 -27.84141 -24.63853 -23.90016 -23.33500 -20.39326 -18.89779 -18.79816 -17.71337 -17.33475 -16.73774 -16.64458 -16.29367 -15.95181 -15.83065 -15.17620 -14.14143 -13.80667 -13.52844 -13.09989 -12.76926 -12.64423 -12.62540 -12.28721 -12.16806 -11.86434 -11.04459 -10.09966 -9.34042 -8.88116 -8.40065 -7.78223 -6.61741 -0.14326 0.31867 1.07242 1.29698 1.38660 1.47268 1.52291 2.08668 2.29920 2.54866 2.59083 2.92248 3.22577 3.77265 3.95030 4.24312 4.35217 4.40018 4.82631 5.06947 5.12566 5.22962 5.37599 5.58214 5.92141 5.97916 6.37874 6.72930 6.98377 8.31882 Molecular weight = 238.03amu Principal moments of inertia in cm(-1) A = 0.028358 B = 0.011590 C = 0.008592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.142851 B = 2415.246907 C = 3258.060176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.368 4.368 8 H 0.116 0.884 9 N -0.266 5.266 10 C -0.035 4.035 11 C 0.090 3.910 12 C -0.109 4.109 13 C -0.062 4.062 14 C -0.144 4.144 15 C 0.105 3.895 16 F -0.145 7.145 17 N -0.574 5.574 18 H 0.445 0.555 19 C 0.399 3.601 20 S -0.733 6.733 21 H 0.282 0.718 22 H 0.174 0.826 23 H 0.196 0.804 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.329 -14.521 -5.510 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.133 0.867 9 N 0.062 4.938 10 C -0.143 4.143 11 C -0.020 4.020 12 C -0.131 4.131 13 C -0.082 4.082 14 C -0.165 4.165 15 C 0.083 3.917 16 F -0.124 7.124 17 N -0.193 5.193 18 H 0.289 0.711 19 C 0.043 3.957 20 S -0.600 6.600 21 H 0.093 0.907 22 H 0.191 0.809 23 H 0.213 0.787 24 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.884 -13.329 -4.876 14.483 hybrid contribution 0.088 0.819 -0.030 0.824 sum 2.973 -12.510 -4.906 13.763 Atomic orbital electron populations 1.70116 1.08653 1.30435 1.31306 1.26166 0.95634 1.03374 0.94039 0.84868 0.78547 0.75808 0.78922 1.17738 1.20697 1.18280 1.19867 0.97993 0.83705 1.48093 0.86688 1.40619 1.30213 1.06510 1.16503 1.19482 1.06479 0.87568 1.00780 1.18717 0.97330 0.94605 0.91384 1.20633 1.03154 0.89229 1.00102 1.21296 0.93140 1.01604 0.92156 1.21347 1.03232 0.88273 1.03624 1.17243 0.94254 0.89554 0.90695 1.91448 1.72567 1.71863 1.76514 1.42332 1.42779 1.04887 1.29312 0.71080 1.21465 0.96153 0.88109 0.89971 1.92053 1.78645 1.40569 1.48690 0.90741 0.80856 0.78653 0.80656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -46.12 10.96 21.64 0.24 -45.88 14 2 C 0.03 1.50 4.24 84.88 0.36 1.86 14 3 Si 1.00 44.67 29.60 68.60 2.03 46.70 14 4 H -0.25 -10.24 7.11 99.48 0.71 -9.53 14 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 14 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 14 7 C -0.37 -20.57 9.17 84.00 0.77 -19.80 14 8 H 0.12 6.17 7.65 -2.91 -0.02 6.15 14 9 N -0.27 -14.24 2.78 -346.23 -0.96 -15.20 14 10 C -0.03 -1.51 6.77 38.51 0.26 -1.25 14 11 C 0.09 3.21 7.26 38.43 0.28 3.49 14 12 C -0.11 -2.42 10.07 22.35 0.22 -2.20 14 13 C -0.06 -1.06 10.03 22.30 0.22 -0.84 14 14 C -0.14 -3.33 10.01 22.33 0.22 -3.11 14 15 C 0.11 3.82 7.32 22.46 0.16 3.99 14 16 F -0.15 -5.80 16.45 44.97 0.74 -5.06 14 17 N -0.57 -23.61 6.15 -190.24 -1.17 -24.78 14 18 H 0.45 15.16 8.96 -92.71 -0.83 14.33 14 19 C 0.40 21.44 7.39 179.14 1.32 22.76 14 20 S -0.73 -44.69 27.44 -56.49 -1.55 -46.24 14 21 H 0.28 15.94 8.31 -92.71 -0.77 15.17 14 22 H 0.17 2.38 8.06 -2.91 -0.02 2.36 14 23 H 0.20 1.24 8.06 -2.91 -0.02 1.22 14 24 H 0.18 2.74 8.06 -2.91 -0.02 2.72 14 Total: -1.00 -79.49 236.05 3.58 -75.91 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.43 Total: 9.66 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 3.83 Total: 4.90 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.89 Total: -85.86 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.74 Total: -5.06 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: -44.69 SS G_CDS: -1.55 Total: -46.24 kcal Total: -79.49 3.58 -75.91 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075952348.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.749 kcal (2) G-P(sol) polarization free energy of solvation -79.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds