Wall clock time and date at job start Mon Mar 30 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31481 * 1 3 3 Si 1.86796 * 119.99947 * 2 1 4 4 H 1.48502 * 109.47152 * 275.39584 * 3 2 1 5 5 H 1.48500 * 109.47413 * 35.39729 * 3 2 1 6 6 H 1.48502 * 109.47268 * 155.39388 * 3 2 1 7 7 C 1.38798 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00039 * 336.33676 * 7 2 1 9 9 N 1.37161 * 120.00070 * 156.33636 * 7 2 1 10 10 C 1.39066 * 125.79220 * 320.04323 * 9 7 2 11 11 C 1.38782 * 133.32007 * 359.97438 * 10 9 7 12 12 C 1.38256 * 119.82102 * 179.69875 * 11 10 9 13 13 F 1.35095 * 119.87880 * 180.29833 * 12 11 10 14 14 C 1.38669 * 120.24744 * 0.27100 * 12 11 10 15 15 C 1.38130 * 120.27652 * 0.02562 * 14 12 11 16 16 C 1.38618 * 119.88556 * 359.97438 * 15 14 12 17 17 N 1.39338 * 133.33221 * 179.97438 * 16 15 14 18 18 H 0.96998 * 125.83839 * 359.97438 * 17 16 15 19 19 C 1.34626 * 125.79139 * 140.00287 * 9 7 2 20 20 S 1.71200 * 125.15580 * 359.97438 * 19 9 7 21 21 H 0.96997 * 120.00368 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.08731 * 359.96431 * 11 10 9 23 23 H 1.08003 * 119.86160 * 180.02562 * 14 12 11 24 24 H 1.08008 * 120.05670 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.3823 2.1122 -1.3939 5 1 1.5079 2.6171 0.8110 6 1 3.5987 1.4100 0.5830 7 6 2.0088 -1.2020 0.0005 8 1 1.5369 -2.0979 0.3763 9 7 3.2939 -1.2522 -0.4762 10 6 3.7727 -0.5812 -1.5962 11 6 3.1847 0.2746 -2.5171 12 6 3.9418 0.8015 -3.5470 13 9 3.3721 1.6395 -4.4405 14 6 5.2838 0.4735 -3.6660 15 6 5.8748 -0.3825 -2.7571 16 6 5.1237 -0.9156 -1.7212 17 7 5.4213 -1.7841 -0.6730 18 1 6.2866 -2.1849 -0.4958 19 6 4.3060 -1.9587 0.0612 20 16 4.1892 -2.9422 1.4577 21 1 -0.4850 0.8400 -0.0004 22 1 2.1396 0.5317 -2.4268 23 1 5.8695 0.8890 -4.4728 24 1 6.9205 -0.6352 -2.8529 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075952349.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:08 Heat of formation + Delta-G solvation = 8.576894 kcal Electronic energy + Delta-G solvation = -14594.566238 eV Core-core repulsion = 11934.654757 eV Total energy + Delta-G solvation = -2659.911481 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.027 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.94252 -43.67312 -38.39933 -36.92159 -34.50430 -31.72924 -30.55513 -28.25444 -25.01558 -23.83925 -23.34996 -20.88324 -19.48245 -18.73184 -18.11525 -17.69103 -16.96021 -16.82530 -16.48596 -16.42433 -15.41232 -15.33206 -14.90188 -14.27705 -13.98369 -13.58086 -13.23737 -12.74830 -12.54648 -12.49263 -12.26879 -12.00934 -11.05722 -10.23833 -9.65426 -9.06895 -8.78513 -8.62778 -6.80070 -0.42115 0.02264 0.72638 0.85792 1.05195 1.20373 1.22963 1.81417 1.94651 1.99636 2.30789 2.52641 3.18133 3.30802 3.88345 3.92494 4.05048 4.14353 4.58540 4.84382 4.96377 5.00302 5.14518 5.41246 5.65758 5.92132 6.08050 6.47201 6.59035 8.06208 Molecular weight = 238.03amu Principal moments of inertia in cm(-1) A = 0.020484 B = 0.014674 C = 0.009445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.595110 B = 1907.694426 C = 2963.805204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.060 3.940 3 Si 0.913 3.087 4 H -0.212 1.212 5 H -0.260 1.260 6 H -0.276 1.276 7 C -0.350 4.350 8 H 0.093 0.907 9 N -0.284 5.284 10 C 0.039 3.961 11 C -0.147 4.147 12 C 0.103 3.897 13 F -0.133 7.133 14 C -0.114 4.114 15 C -0.048 4.048 16 C 0.063 3.937 17 N -0.552 5.552 18 H 0.455 0.545 19 C 0.423 3.577 20 S -0.762 6.762 21 H 0.302 0.698 22 H 0.128 0.872 23 H 0.197 0.803 24 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.810 7.738 -12.914 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.155 4.155 3 Si 0.733 3.267 4 H -0.135 1.135 5 H -0.184 1.184 6 H -0.201 1.201 7 C -0.479 4.479 8 H 0.111 0.889 9 N 0.042 4.958 10 C -0.069 4.069 11 C -0.170 4.170 12 C 0.082 3.918 13 F -0.112 7.112 14 C -0.135 4.135 15 C -0.069 4.069 16 C -0.047 4.047 17 N -0.171 5.171 18 H 0.301 0.699 19 C 0.065 3.935 20 S -0.631 6.631 21 H 0.113 0.887 22 H 0.146 0.854 23 H 0.214 0.786 24 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 11.283 7.181 -11.937 17.927 hybrid contribution -0.382 0.564 0.151 0.697 sum 10.901 7.745 -11.787 17.826 Atomic orbital electron populations 1.69767 1.07544 1.31577 1.37627 1.25903 0.95849 1.01394 0.92305 0.86399 0.79245 0.78888 0.82140 1.13503 1.18427 1.20139 1.18977 0.83736 0.99030 1.46200 0.88905 1.40916 1.07842 1.30617 1.16376 1.18570 0.93863 1.02511 0.91994 1.20161 1.01646 0.99858 0.95289 1.17262 0.92638 0.93420 0.88506 1.91505 1.85509 1.68663 1.65509 1.21357 0.91585 0.98957 1.01583 1.20455 1.01546 0.95436 0.89506 1.18842 0.92947 0.98120 0.94749 1.42431 1.11466 1.40620 1.22574 0.69888 1.21989 0.81651 0.97239 0.92623 1.92764 1.93842 1.53111 1.23367 0.88683 0.85371 0.78557 0.78532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.14 13.96 21.64 0.30 -43.84 14 2 C 0.06 3.10 4.82 84.88 0.41 3.51 14 3 Si 0.91 38.80 24.51 68.60 1.68 40.48 14 4 H -0.21 -7.77 5.52 99.48 0.55 -7.22 14 5 H -0.26 -10.56 7.11 99.48 0.71 -9.85 14 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 14 7 C -0.35 -19.54 9.71 83.99 0.82 -18.73 14 8 H 0.09 5.95 8.06 -2.91 -0.02 5.93 14 9 N -0.28 -13.93 2.39 -346.37 -0.83 -14.76 14 10 C 0.04 1.52 5.23 38.49 0.20 1.72 14 11 C -0.15 -5.21 6.79 22.40 0.15 -5.06 14 12 C 0.10 2.74 7.29 22.38 0.16 2.90 14 13 F -0.13 -3.48 17.26 44.97 0.78 -2.71 14 14 C -0.11 -1.98 10.01 22.35 0.22 -1.75 14 15 C -0.05 -0.86 10.06 22.33 0.22 -0.64 14 16 C 0.06 1.90 7.26 38.40 0.28 2.18 14 17 N -0.55 -18.82 6.16 -190.15 -1.17 -19.99 14 18 H 0.45 11.80 8.96 -92.71 -0.83 10.97 14 19 C 0.42 20.18 7.93 179.14 1.42 21.60 14 20 S -0.76 -42.62 30.57 -56.49 -1.73 -44.34 14 21 H 0.30 14.19 8.31 -92.71 -0.77 13.42 14 22 H 0.13 5.01 5.79 -2.91 -0.02 5.00 14 23 H 0.20 1.55 8.06 -2.91 -0.02 1.52 14 24 H 0.20 1.47 8.06 -2.91 -0.02 1.44 14 Total: -1.00 -73.32 230.92 3.20 -70.12 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.27 Total: 9.30 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 3.89 Total: 5.74 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.69 Total: -78.59 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.68 Total: 40.48 kcal Atomic # 16 Polarization: -42.62 SS G_CDS: -1.73 Total: -44.34 kcal Total: -73.32 3.20 -70.12 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075952349.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.695 kcal (2) G-P(sol) polarization free energy of solvation -73.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds