Wall clock time and date at job start Mon Mar 30 2020 05:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31492 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48492 * 109.47185 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.46948 * 120.00193 * 3 2 1 6 6 H 1.48508 * 109.46684 * 240.00044 * 3 2 1 7 7 C 1.38783 * 119.99870 * 179.71975 * 2 1 3 8 8 H 1.08007 * 119.99849 * 153.85861 * 7 2 1 9 9 N 1.37149 * 120.00241 * 333.86399 * 7 2 1 10 10 C 1.39129 * 125.80723 * 142.45348 * 9 7 2 11 11 C 1.38769 * 133.32050 * 359.96343 * 10 9 7 12 12 C 1.38053 * 119.87542 * 179.97438 * 11 10 9 13 13 C 1.38699 * 120.26722 * 0.06700 * 12 11 10 14 14 F 1.35098 * 119.86993 * 179.97438 * 13 12 11 15 15 C 1.38328 * 120.25260 * 359.96614 * 13 12 11 16 16 C 1.38624 * 119.83939 * 359.97438 * 15 13 12 17 17 N 1.39205 * 133.34117 * 180.02562 * 16 15 13 18 18 H 0.97000 * 125.82530 * 359.96700 * 17 16 15 19 19 C 1.34631 * 125.80629 * 322.14374 * 9 7 2 20 20 S 1.71196 * 125.15567 * 359.97438 * 19 9 7 21 21 H 0.96997 * 119.99941 * 174.12706 * 1 2 3 22 22 H 1.08000 * 120.06324 * 0.04164 * 11 10 9 23 23 H 1.07993 * 119.86788 * 180.02562 * 12 11 10 24 24 H 1.07997 * 120.08536 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 1.2839 2.7464 -0.0006 5 1 3.1026 1.6964 1.2125 6 1 3.1026 1.6964 -1.2126 7 6 2.0088 -1.2019 0.0059 8 1 3.0060 -1.2517 -0.4060 9 7 1.4283 -2.3264 0.5346 10 6 1.5565 -3.6193 0.0371 11 6 2.2379 -4.1602 -1.0441 12 6 2.1734 -5.5174 -1.2884 13 6 1.4291 -6.3425 -0.4584 14 9 1.3711 -7.6695 -0.7052 15 6 0.7462 -5.8120 0.6212 16 6 0.8068 -4.4504 0.8742 17 7 0.2473 -3.6348 1.8537 18 1 -0.3269 -3.9294 2.5779 19 6 0.6420 -2.3676 1.6267 20 16 0.2078 -1.0139 2.5805 21 1 -0.4850 -0.8356 -0.0860 22 1 2.8184 -3.5207 -1.6925 23 1 2.7040 -5.9382 -2.1296 24 1 0.1671 -6.4569 1.2655 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075952352.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:13 Heat of formation + Delta-G solvation = 19.753188 kcal Electronic energy + Delta-G solvation = -14342.708306 eV Core-core repulsion = 11683.281466 eV Total energy + Delta-G solvation = -2659.426840 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.027 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.72270 -41.79801 -36.93488 -35.10070 -32.23954 -29.99959 -28.86984 -25.86009 -23.31301 -22.36073 -21.76088 -18.97265 -17.83451 -17.29203 -16.62194 -15.64315 -15.31391 -15.09738 -14.76965 -14.53204 -14.03051 -13.78446 -13.00757 -12.72948 -12.54375 -11.38080 -11.23741 -11.09500 -10.59560 -10.33068 -10.22109 -10.16281 -9.17408 -8.53348 -8.27317 -7.30097 -6.45476 -5.91636 -4.73626 1.11358 1.48188 2.79223 2.86747 3.23850 3.36471 3.49239 3.64259 3.78206 3.93486 4.30581 4.52658 4.76755 4.82625 5.11725 5.41509 5.52229 5.73666 6.01042 6.15445 6.28788 6.46166 6.84894 7.22242 7.38552 7.65618 7.89052 8.53701 8.66276 10.12377 Molecular weight = 238.03amu Principal moments of inertia in cm(-1) A = 0.037081 B = 0.008706 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.916003 B = 3215.344297 C = 3819.001948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.033 3.967 3 Si 1.088 2.912 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.283 1.283 7 C -0.399 4.399 8 H 0.113 0.887 9 N -0.262 5.262 10 C 0.037 3.963 11 C -0.046 4.046 12 C -0.165 4.165 13 C 0.099 3.901 14 F -0.142 7.142 15 C -0.151 4.151 16 C 0.097 3.903 17 N -0.583 5.583 18 H 0.432 0.568 19 C 0.365 3.635 20 S -0.647 6.647 21 H 0.283 0.717 22 H 0.139 0.861 23 H 0.138 0.862 24 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -9.487 -4.081 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.191 4.191 3 Si 0.911 3.089 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.209 1.209 7 C -0.529 4.529 8 H 0.130 0.870 9 N 0.064 4.936 10 C -0.072 4.072 11 C -0.068 4.068 12 C -0.186 4.186 13 C 0.077 3.923 14 F -0.121 7.121 15 C -0.174 4.174 16 C -0.016 4.016 17 N -0.201 5.201 18 H 0.273 0.727 19 C 0.015 3.985 20 S -0.510 6.510 21 H 0.094 0.906 22 H 0.157 0.843 23 H 0.156 0.844 24 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.157 -6.760 -3.352 8.179 hybrid contribution -0.035 -2.973 -0.132 2.976 sum 3.122 -9.733 -3.483 10.799 Atomic orbital electron populations 1.70482 1.07720 1.32660 1.24873 1.26594 0.95444 1.02782 0.94261 0.83212 0.75157 0.73418 0.77073 1.19666 1.19885 1.20940 1.20705 1.02587 0.86138 1.43468 0.86986 1.40793 1.32384 1.04900 1.15522 1.18901 1.03436 0.86626 0.98260 1.19930 0.97990 0.93844 0.95027 1.20676 1.03526 0.92655 1.01790 1.17005 1.01134 0.77393 0.96750 1.91461 1.95289 1.31347 1.94001 1.19621 1.05598 0.91983 1.00224 1.17952 0.98939 0.91967 0.92758 1.42604 1.45612 1.04989 1.26892 0.72655 1.22069 0.98434 0.88347 0.89636 1.92523 1.76254 1.29439 1.52784 0.90596 0.84282 0.84386 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.45 11.59 55.49 0.64 -19.81 14 2 C 0.03 0.86 4.02 -17.50 -0.07 0.79 14 3 Si 1.09 23.09 29.99 -169.99 -5.10 17.99 14 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 14 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 14 6 H -0.28 -5.35 7.11 56.52 0.40 -4.95 14 7 C -0.40 -9.95 9.60 -14.97 -0.14 -10.10 14 8 H 0.11 2.57 7.96 -52.48 -0.42 2.15 14 9 N -0.26 -6.37 2.57 -60.82 -0.16 -6.53 14 10 C 0.04 0.75 6.76 -83.78 -0.57 0.18 14 11 C -0.05 -0.76 9.98 -39.45 -0.39 -1.15 14 12 C -0.16 -2.31 10.01 -39.48 -0.40 -2.71 14 13 C 0.10 1.45 7.30 -39.38 -0.29 1.16 14 14 F -0.14 -1.98 17.26 2.25 0.04 -1.94 14 15 C -0.15 -2.29 10.04 -39.41 -0.40 -2.69 14 16 C 0.10 1.79 7.26 -83.80 -0.61 1.19 14 17 N -0.58 -11.75 6.15 -11.48 -0.07 -11.83 14 18 H 0.43 7.39 8.96 -40.82 -0.37 7.02 14 19 C 0.36 9.11 6.90 -87.17 -0.60 8.51 14 20 S -0.65 -18.40 27.39 -107.50 -2.94 -21.34 14 21 H 0.28 8.13 7.38 -40.82 -0.30 7.83 14 22 H 0.14 2.08 8.06 -52.49 -0.42 1.66 14 23 H 0.14 1.52 8.06 -52.49 -0.42 1.10 14 24 H 0.13 1.69 8.06 -52.49 -0.42 1.26 14 LS Contribution 236.60 15.07 3.57 3.57 Total: -1.00 -30.93 236.60 -8.63 -39.56 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -1.15 Total: 5.14 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.46 Total: -4.82 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.42 Total: -38.16 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.10 Total: 17.99 kcal Atomic # 16 Polarization: -18.40 SS G_CDS: -2.94 Total: -21.34 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.93 -8.63 -39.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075952352.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.316 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds