Wall clock time and date at job start Mon Mar 30 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30086 * 124.97904 * 2 1 4 4 C 1.35936 * 109.74180 * 180.27477 * 3 2 1 5 5 C 1.39709 * 133.44837 * 179.74308 * 4 3 2 6 6 C 1.37717 * 119.84985 * 179.97438 * 5 4 3 7 7 C 1.38865 * 120.51966 * 359.97438 * 6 5 4 8 8 F 1.35104 * 119.82742 * 180.02562 * 7 6 5 9 9 C 1.38385 * 120.35383 * 0.03007 * 7 6 5 10 10 F 1.35098 * 120.11244 * 179.97438 * 9 7 6 11 11 C 1.38868 * 119.77008 * 359.97438 * 9 7 6 12 12 N 1.36544 * 124.98559 * 179.78506 * 2 1 3 13 13 C 1.37279 * 126.40773 * 0.02562 * 12 2 1 14 14 H 1.07997 * 120.00645 * 136.44243 * 13 12 2 15 15 C 1.38896 * 119.99867 * 316.44260 * 13 12 2 16 16 N 1.31401 * 120.00001 * 342.53660 * 15 13 12 17 17 Si 1.86803 * 120.00245 * 162.53821 * 15 13 12 18 18 H 1.48496 * 109.47465 * 89.99915 * 17 15 13 19 19 H 1.48499 * 109.47045 * 210.00152 * 17 15 13 20 20 H 1.48505 * 109.47019 * 330.00075 * 17 15 13 21 21 H 1.09005 * 109.47170 * 275.77337 * 1 2 3 22 22 H 1.08993 * 109.47633 * 35.77434 * 1 2 3 23 23 H 1.09003 * 109.47062 * 155.77899 * 1 2 3 24 24 H 1.07997 * 120.07548 * 359.97438 * 5 4 3 25 25 H 1.08006 * 119.74355 * 179.97438 * 6 5 4 26 26 H 0.97002 * 119.99699 * 185.06511 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0659 0.0000 4 6 3.5643 0.7086 -0.0061 5 6 4.7579 1.4347 -0.0134 6 6 5.9643 0.7705 -0.0180 7 6 6.0051 -0.6175 -0.0149 8 9 7.1964 -1.2548 -0.0189 9 6 4.8321 -1.3516 -0.0078 10 9 4.8775 -2.7018 -0.0054 11 6 3.6081 -0.6956 -0.0032 12 7 2.2899 -1.1187 0.0042 13 6 1.8519 -2.4197 0.0086 14 1 2.3221 -3.1501 -0.6331 15 6 0.8039 -2.7968 0.8384 16 7 0.4581 -2.0317 1.8492 17 14 -0.1141 -4.3918 0.5176 18 1 0.5426 -5.4986 1.2584 19 1 -1.5198 -4.2547 0.9764 20 1 -0.0950 -4.6900 -0.9370 21 1 -0.3634 0.1034 1.0225 22 1 -0.3634 0.8337 -0.6007 23 1 -0.3633 -0.9372 -0.4216 24 1 4.7345 2.5145 -0.0154 25 1 6.8859 1.3336 -0.0240 26 1 -0.2238 -2.3292 2.4716 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075972661.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:18 Heat of formation + Delta-G solvation = -30.127777 kcal Electronic energy + Delta-G solvation = -16678.901512 eV Core-core repulsion = 13586.931590 eV Total energy + Delta-G solvation = -3091.969923 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.63925 -47.69575 -41.00269 -36.36825 -33.99014 -31.79928 -30.01829 -29.03836 -26.55967 -25.40928 -21.84195 -21.41558 -20.18581 -17.96662 -17.23857 -16.51480 -15.92238 -15.59145 -15.21391 -14.79389 -14.33391 -14.08931 -13.93862 -13.55586 -12.98198 -12.30267 -12.15882 -11.93725 -11.83059 -11.69554 -11.36837 -11.10420 -10.94121 -10.70350 -10.26479 -9.60993 -9.08286 -9.02104 -7.48751 -7.16734 -6.96585 -4.75601 1.50671 2.09282 2.87574 2.94527 2.99580 3.58840 3.74575 4.14175 4.44836 4.50535 4.82483 5.08686 5.13924 5.53395 5.72696 6.04982 6.13720 6.37233 6.44683 6.53574 6.54873 6.71803 6.84021 6.99320 7.20206 7.39911 7.66205 8.00000 8.37361 8.97780 9.10875 10.05845 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.029119 B = 0.010161 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.339949 B = 2754.894345 C = 3567.448274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.277 3.723 3 N -0.530 5.530 4 C 0.054 3.946 5 C -0.057 4.057 6 C -0.155 4.155 7 C 0.032 3.968 8 F -0.143 7.143 9 C 0.102 3.898 10 F -0.133 7.133 11 C -0.011 4.011 12 N -0.277 5.277 13 C -0.357 4.357 14 H 0.109 0.891 15 C 0.060 3.940 16 N -0.829 5.829 17 Si 0.935 3.065 18 H -0.268 1.268 19 H -0.272 1.272 20 H -0.260 1.260 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.131 0.869 25 H 0.135 0.865 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.704 1.540 -2.339 3.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.015 3.985 3 N -0.252 5.252 4 C -0.072 4.072 5 C -0.077 4.077 6 C -0.177 4.177 7 C 0.009 3.991 8 F -0.122 7.122 9 C 0.080 3.920 10 F -0.112 7.112 11 C -0.128 4.128 12 N 0.054 4.946 13 C -0.485 4.485 14 H 0.127 0.873 15 C -0.153 4.153 16 N -0.458 5.458 17 Si 0.758 3.242 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.184 1.184 21 H 0.104 0.896 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.148 0.852 25 H 0.153 0.847 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.098 2.150 -2.177 3.251 hybrid contribution 0.191 -2.078 0.183 2.095 sum 1.289 0.072 -1.994 2.375 Atomic orbital electron populations 1.20075 0.85592 1.01666 1.03143 1.23367 0.95364 0.80619 0.99141 1.70328 0.99750 1.27880 1.27291 1.18819 0.92703 0.89119 1.06587 1.19869 0.88476 0.99123 1.00243 1.20360 0.98575 0.90879 1.07872 1.16963 0.78653 0.90547 1.12919 1.91417 1.43459 1.82407 1.94914 1.16413 0.90849 0.76435 1.08339 1.91446 1.97130 1.28542 1.94041 1.18813 0.86455 0.95157 1.12365 1.41266 1.01143 1.06874 1.45318 1.19781 1.18141 0.84234 1.26369 0.87329 1.25676 0.96499 0.99895 0.93243 1.69955 1.28287 1.37485 1.10049 0.85794 0.78558 0.79903 0.79973 1.19322 1.19695 1.18378 0.89607 0.91771 0.91036 0.85159 0.84706 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.96 8.68 36.01 0.31 -0.65 15 2 C 0.28 6.80 7.28 -154.37 -1.12 5.68 15 3 N -0.53 -12.96 11.27 -8.10 -0.09 -13.06 15 4 C 0.05 1.27 7.22 -84.65 -0.61 0.66 15 5 C -0.06 -1.09 10.10 -39.22 -0.40 -1.49 15 6 C -0.15 -2.75 9.99 -39.54 -0.39 -3.15 15 7 C 0.03 0.65 7.30 -39.30 -0.29 0.36 15 8 F -0.14 -2.80 17.17 2.25 0.04 -2.76 15 9 C 0.10 2.40 7.32 -39.29 -0.29 2.11 15 10 F -0.13 -3.20 16.68 2.25 0.04 -3.17 15 11 C -0.01 -0.27 6.81 -83.80 -0.57 -0.84 15 12 N -0.28 -7.21 2.79 -56.61 -0.16 -7.37 15 13 C -0.36 -9.13 9.12 -14.87 -0.14 -9.27 15 14 H 0.11 2.75 7.89 -52.49 -0.41 2.34 15 15 C 0.06 1.43 4.01 -17.49 -0.07 1.35 15 16 N -0.83 -20.36 11.11 55.49 0.62 -19.74 15 17 Si 0.93 18.04 29.59 -169.99 -5.03 13.01 15 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 19 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 21 H 0.09 1.81 7.43 -51.93 -0.39 1.42 15 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.07 1.47 6.83 -51.93 -0.35 1.11 15 24 H 0.13 2.08 8.06 -52.49 -0.42 1.66 15 25 H 0.14 1.88 8.06 -52.48 -0.42 1.46 15 26 H 0.28 6.41 8.32 -40.82 -0.34 6.07 15 LS Contribution 242.48 15.07 3.65 3.65 Total: -1.00 -27.85 242.48 -6.06 -33.90 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -1.56 Total: 0.76 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.57 Total: -5.23 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.37 Total: -40.17 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.08 Total: -5.93 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.85 -6.06 -33.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075972661.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.774 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds