Wall clock time and date at job start Mon Mar 30 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99609 * 2 1 4 4 H 1.48500 * 109.46779 * 266.41760 * 3 2 1 5 5 H 1.48494 * 109.47345 * 26.41548 * 3 2 1 6 6 H 1.48500 * 109.47092 * 146.41816 * 3 2 1 7 7 C 1.38745 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00027 * 343.21379 * 7 2 1 9 9 N 1.36800 * 119.99851 * 163.21978 * 7 2 1 10 10 C 1.47040 * 120.58890 * 331.32816 * 9 7 2 11 11 C 1.53552 * 108.22188 * 225.18644 * 10 9 7 12 12 N 1.47053 * 108.20897 * 303.41591 * 11 10 9 13 13 C 1.39991 * 118.76953 * 44.93532 * 12 11 10 14 14 C 1.38578 * 120.28493 * 163.55086 * 13 12 11 15 15 C 1.38387 * 119.87929 * 179.76910 * 14 13 12 16 16 Cl 1.73598 * 119.87154 * 180.02562 * 15 14 13 17 17 C 1.38483 * 120.25716 * 0.02562 * 15 14 13 18 18 C 1.38177 * 120.25733 * 0.31248 * 17 15 14 19 19 C 1.38827 * 119.87152 * 359.44263 * 18 17 15 20 20 H 0.96996 * 120.00295 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.71330 * 344.86982 * 10 9 7 22 22 H 1.09003 * 109.71409 * 105.50776 * 10 9 7 23 23 H 1.09001 * 109.71330 * 63.09431 * 11 10 9 24 24 H 1.08998 * 109.71859 * 183.69025 * 11 10 9 25 25 H 0.97003 * 120.61441 * 224.96200 * 12 11 10 26 26 H 1.08006 * 120.05460 * 359.78524 * 14 13 12 27 27 H 1.07996 * 119.86890 * 180.02562 * 17 15 14 28 28 H 1.07996 * 120.06143 * 179.69066 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5734 2.0027 -1.3974 5 1 1.4118 2.6734 0.6228 6 1 3.5078 1.4634 0.7744 7 6 2.0101 -1.2015 0.0005 8 1 1.5046 -2.1168 0.2711 9 7 3.3344 -1.2268 -0.3415 10 6 3.8864 -0.2299 -1.2708 11 6 4.7767 -0.9610 -2.2860 12 7 5.8056 -1.7043 -1.5434 13 6 5.4224 -2.4431 -0.4177 14 6 6.2655 -3.4121 0.1025 15 6 5.8803 -4.1341 1.2184 16 17 6.9370 -5.3475 1.8703 17 6 4.6552 -3.8926 1.8171 18 6 3.8051 -2.9332 1.3011 19 6 4.1856 -2.2006 0.1850 20 1 -0.4850 0.8400 -0.0004 21 1 3.0738 0.2765 -1.7919 22 1 4.4802 0.4984 -0.7185 23 1 4.1733 -1.6542 -2.8720 24 1 5.2512 -0.2365 -2.9478 25 1 6.7326 -1.6828 -1.8280 26 1 7.2217 -3.6031 -0.3621 27 1 4.3611 -4.4595 2.6880 28 1 2.8483 -2.7509 1.7675 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076926526.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:09 Heat of formation + Delta-G solvation = 43.129289 kcal Electronic energy + Delta-G solvation = -14762.420030 eV Core-core repulsion = 12225.423452 eV Total energy + Delta-G solvation = -2536.996578 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.48198 -36.55974 -35.28163 -34.60752 -32.08161 -29.95127 -29.14400 -26.77844 -23.94272 -23.30926 -21.47356 -19.61799 -17.35541 -17.01983 -16.28462 -15.57697 -14.98819 -14.21069 -13.95558 -13.51746 -13.18325 -12.89938 -12.77323 -12.52897 -12.38132 -11.58053 -11.37901 -11.02259 -10.78739 -10.57113 -10.37112 -10.22518 -9.92510 -9.44063 -9.22096 -8.61664 -7.34699 -6.51979 -6.40135 -3.85854 2.17280 2.30329 2.93775 2.96980 3.16997 3.18074 3.93425 4.03793 4.40890 4.54476 4.97888 5.40076 5.47882 5.64583 5.66550 5.87554 5.97051 6.19310 6.26241 6.32322 6.68153 6.76912 6.99273 7.18770 7.41403 7.56658 7.79849 8.01696 8.30587 8.45721 9.11702 9.39113 10.60305 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.008018 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.400632 B = 3491.335361 C = 3993.600051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.047 3.953 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.301 4.301 8 H 0.108 0.892 9 N -0.472 5.472 10 C 0.074 3.926 11 C 0.117 3.883 12 N -0.757 5.757 13 C 0.118 3.882 14 C -0.134 4.134 15 C -0.093 4.093 16 Cl -0.113 7.113 17 C -0.099 4.099 18 C -0.162 4.162 19 C 0.170 3.830 20 H 0.275 0.725 21 H 0.093 0.907 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.393 0.607 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.006 -2.043 -1.914 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.158 4.158 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.428 4.428 8 H 0.125 0.875 9 N -0.165 5.165 10 C -0.051 4.051 11 C -0.010 4.010 12 N -0.392 5.392 13 C 0.014 3.986 14 C -0.159 4.159 15 C -0.123 4.123 16 Cl -0.085 7.085 17 C -0.120 4.120 18 C -0.187 4.187 19 C 0.057 3.943 20 H 0.085 0.915 21 H 0.111 0.889 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.228 0.772 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.502 -1.734 -2.029 9.870 hybrid contribution 0.732 0.891 -0.074 1.155 sum 10.234 -0.843 -2.103 10.482 Atomic orbital electron populations 1.69778 1.05885 1.28075 1.46870 1.25344 0.95406 0.98383 0.96684 0.86929 0.79994 0.83163 0.78224 1.20327 1.21742 1.19045 1.19115 0.81749 0.96204 1.45713 0.87495 1.42542 1.06847 1.26923 1.40229 1.22490 0.97827 0.92414 0.92385 1.21744 0.90532 0.95122 0.93582 1.44162 1.08874 1.55860 1.30316 1.17036 0.95032 0.95844 0.90656 1.19863 1.00242 0.97486 0.98309 1.19923 0.93704 0.98410 1.00261 1.98264 1.67215 1.56552 1.86462 1.20455 0.92530 0.99010 1.00046 1.20369 1.01538 0.99896 0.96894 1.17683 0.89349 0.94274 0.93027 0.91451 0.88926 0.92734 0.92238 0.90530 0.77246 0.86775 0.86735 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.05 13.97 55.49 0.78 -23.28 15 2 C 0.05 1.23 5.28 -17.45 -0.09 1.13 15 3 Si 0.89 20.07 24.13 -169.99 -4.10 15.97 15 4 H -0.28 -5.78 6.44 56.52 0.36 -5.42 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.10 6.64 56.52 0.38 -5.73 15 7 C -0.30 -7.83 9.06 -15.15 -0.14 -7.97 15 8 H 0.11 2.99 7.37 -52.49 -0.39 2.60 15 9 N -0.47 -10.98 2.76 -112.23 -0.31 -11.29 15 10 C 0.07 1.49 4.28 -3.46 -0.01 1.47 15 11 C 0.12 1.90 7.28 -3.45 -0.03 1.88 15 12 N -0.76 -12.41 5.83 -57.75 -0.34 -12.75 15 13 C 0.12 2.27 6.53 -83.46 -0.54 1.73 15 14 C -0.13 -2.39 9.71 -39.40 -0.38 -2.77 15 15 C -0.09 -1.67 6.32 -39.44 -0.25 -1.92 15 16 Cl -0.11 -1.79 28.95 -51.86 -1.50 -3.29 15 17 C -0.10 -1.86 9.81 -39.51 -0.39 -2.25 15 18 C -0.16 -3.41 9.24 -39.39 -0.36 -3.78 15 19 C 0.17 3.73 6.34 -83.54 -0.53 3.20 15 20 H 0.28 7.12 8.31 -40.82 -0.34 6.78 15 21 H 0.09 1.90 5.06 -51.93 -0.26 1.64 15 22 H 0.05 1.10 6.42 -51.93 -0.33 0.77 15 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.39 5.23 8.90 -40.82 -0.36 4.86 15 26 H 0.11 1.78 8.06 -52.48 -0.42 1.36 15 27 H 0.11 1.91 8.06 -52.49 -0.42 1.49 15 28 H 0.13 2.86 6.87 -52.49 -0.36 2.50 15 LS Contribution 245.00 15.07 3.69 3.69 Total: -1.00 -27.36 245.00 -7.11 -34.47 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -2.60 Total: 5.75 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.73 Total: -9.27 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.13 Total: -47.32 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.10 Total: 15.97 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.50 Total: -3.29 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.36 -7.11 -34.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076926526.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.597 kcal (2) G-P(sol) polarization free energy of solvation -27.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds