Wall clock time and date at job start Mon Mar 30 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 S 1.80994 * 109.47243 * 180.02562 * 9 8 7 11 11 C 1.76204 * 100.00119 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99618 * 359.97438 * 11 10 9 13 13 C 1.38792 * 120.00019 * 179.97438 * 11 10 9 14 14 N 1.31630 * 120.00187 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00094 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47275 * 90.00261 * 15 13 11 17 17 H 1.48504 * 109.46910 * 209.99875 * 15 13 11 18 18 H 1.48495 * 109.46968 * 329.99832 * 15 13 11 19 19 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 20 20 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 21 21 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 22 22 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 23 23 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 24 24 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 25 25 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 26 26 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 27 27 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 28 28 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 29 29 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 30 30 H 0.96998 * 120.00789 * 180.02562 * 14 13 11 31 31 H 1.07997 * 120.03255 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 16 8.0869 -3.6105 -0.0176 11 6 8.4858 -5.3268 -0.0267 12 1 7.6970 -6.0645 -0.0305 13 6 9.8137 -5.7306 -0.0291 14 7 10.1117 -7.0127 -0.0354 15 14 11.1780 -4.4547 -0.0232 16 1 11.5400 -4.1234 1.3784 17 1 12.3676 -4.9988 -0.7262 18 1 10.7111 -3.2277 -0.7172 19 6 2.1970 -1.1966 -0.0058 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8925 -0.5094 22 1 -0.3633 -0.8875 -0.5181 23 1 1.6565 2.1324 -0.0004 24 1 4.1176 2.1381 0.0098 25 1 5.3552 0.0102 0.0002 26 1 6.0278 -1.7576 -0.8990 27 1 6.0280 -1.7669 0.8810 28 1 5.9445 -4.2448 0.8688 29 1 5.9443 -4.2363 -0.9111 30 1 11.0397 -7.2950 -0.0367 31 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082692403.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:30 Heat of formation + Delta-G solvation = -32.072405 kcal Electronic energy + Delta-G solvation = -13664.987238 eV Core-core repulsion = 11230.313720 eV Total energy + Delta-G solvation = -2434.673518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.09604 -37.67975 -32.62071 -32.51504 -31.75248 -29.49630 -27.09391 -25.79232 -23.40190 -22.54564 -20.80587 -17.88006 -17.53200 -16.10540 -15.97449 -15.85052 -15.06163 -14.49582 -13.94470 -13.88550 -13.48971 -13.26571 -13.09799 -12.89647 -12.30877 -11.76215 -11.74413 -11.63816 -11.31496 -11.09745 -10.75192 -10.59540 -10.56137 -9.91444 -9.07844 -8.85919 -8.72127 -8.17138 -7.06656 -6.34765 -4.09857 1.25394 1.42168 2.62300 3.24135 3.29175 3.38912 3.70300 3.80841 4.24634 4.66125 4.72421 4.76398 5.02401 5.03528 5.11947 5.23781 5.24079 5.27339 5.40745 5.44342 5.61313 5.62345 5.76574 5.99835 6.14154 6.28263 6.38171 6.42426 6.50152 6.76054 7.51444 7.88852 8.39126 9.09543 10.74538 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.064806 B = 0.004162 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.951769 B = 6726.082753 C = 7132.284748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.051 4.051 3 C -0.167 4.167 4 C -0.076 4.076 5 C -0.216 4.216 6 C 0.143 3.857 7 O -0.314 6.314 8 C 0.079 3.921 9 C -0.090 4.090 10 S -0.195 6.195 11 C -0.504 4.504 12 H 0.091 0.909 13 C 0.094 3.906 14 N -0.878 5.878 15 Si 0.861 3.139 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.238 1.238 19 C -0.159 4.159 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.120 0.880 24 H 0.123 0.877 25 H 0.130 0.870 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.272 0.728 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.729 15.540 0.016 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.052 4.052 3 C -0.185 4.185 4 C -0.094 4.094 5 C -0.234 4.234 6 C 0.096 3.904 7 O -0.228 6.228 8 C 0.003 3.997 9 C -0.238 4.238 10 S 0.031 5.969 11 C -0.652 4.652 12 H 0.109 0.891 13 C -0.115 4.115 14 N -0.514 5.514 15 Si 0.685 3.315 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.162 1.162 19 C -0.177 4.177 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.138 0.862 24 H 0.141 0.859 25 H 0.148 0.852 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.963 16.074 0.014 21.292 hybrid contribution 0.250 -0.654 0.035 0.700 sum -13.714 15.420 0.049 20.636 Atomic orbital electron populations 1.20796 0.90924 1.02841 1.02444 1.19675 0.95905 0.92328 0.97257 1.20883 0.94153 0.97367 1.06114 1.20920 0.94126 0.97376 0.97021 1.21349 1.00694 0.92262 1.09135 1.19059 0.91760 0.85031 0.94504 1.86091 1.20912 1.27883 1.87883 1.22634 0.76774 0.98307 1.01989 1.23026 0.98529 0.96765 1.05478 1.84052 0.99523 1.15640 1.97651 1.22069 0.96611 0.87510 1.58993 0.89061 1.24761 0.98089 0.95415 0.93233 1.69926 1.19613 1.14123 1.47759 0.86689 0.82041 0.82943 0.79794 1.19225 1.19868 1.16180 1.20309 0.91003 0.98594 1.07819 0.91000 0.91441 0.91369 0.86214 0.85902 0.85212 0.91374 0.91395 0.90166 0.90122 0.91801 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.05 -0.56 5.88 -104.64 -0.62 -1.18 16 3 C -0.17 -1.75 9.70 -39.56 -0.38 -2.13 16 4 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 5 C -0.22 -2.83 9.04 -39.44 -0.36 -3.18 16 6 C 0.14 2.09 6.69 -39.22 -0.26 1.83 16 7 O -0.31 -5.18 10.14 -19.45 -0.20 -5.38 16 8 C 0.08 1.30 4.74 37.15 0.18 1.48 16 9 C -0.09 -1.79 6.04 37.15 0.22 -1.57 16 10 S -0.20 -4.67 19.41 -107.50 -2.09 -6.76 16 11 C -0.50 -14.48 10.04 30.94 0.31 -14.17 16 12 H 0.09 2.80 8.03 -52.48 -0.42 2.37 16 13 C 0.09 2.71 5.50 -17.43 -0.10 2.61 16 14 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 15 Si 0.86 21.08 27.74 -169.99 -4.71 16.36 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 19 C -0.16 -2.04 9.64 -39.43 -0.38 -2.42 16 20 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 22 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 23 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 24 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 25 H 0.13 1.61 6.30 -52.48 -0.33 1.28 16 26 H 0.07 1.06 7.66 -51.93 -0.40 0.67 16 27 H 0.07 1.06 7.66 -51.92 -0.40 0.66 16 28 H 0.08 1.62 8.14 -51.91 -0.42 1.19 16 29 H 0.08 1.63 8.14 -51.92 -0.42 1.20 16 30 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 282.26 15.07 4.25 4.25 Total: -1.00 -30.52 282.26 -7.47 -37.99 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.08 Total: -0.39 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.42 Total: -20.50 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.78 Total: -25.58 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.20 Total: -5.38 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.36 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -2.09 Total: -6.76 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.52 -7.47 -37.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692403.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.919 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds