Wall clock time and date at job start Mon Mar 30 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 S 1.80994 * 109.47243 * 180.02562 * 9 8 7 11 11 C 1.76204 * 100.00119 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99618 * 359.97438 * 11 10 9 13 13 C 1.38792 * 120.00019 * 179.97438 * 11 10 9 14 14 N 1.31630 * 120.00187 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00094 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47275 * 90.00261 * 15 13 11 17 17 H 1.48504 * 109.46910 * 209.99875 * 15 13 11 18 18 H 1.48495 * 109.46968 * 329.99832 * 15 13 11 19 19 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 20 20 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 21 21 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 22 22 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 23 23 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 24 24 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 25 25 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 26 26 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 27 27 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 28 28 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 29 29 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 30 30 H 0.96998 * 120.00789 * 180.02562 * 14 13 11 31 31 H 1.07997 * 120.03255 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 16 8.0869 -3.6105 -0.0176 11 6 8.4858 -5.3268 -0.0267 12 1 7.6970 -6.0645 -0.0305 13 6 9.8137 -5.7306 -0.0291 14 7 10.1117 -7.0127 -0.0354 15 14 11.1780 -4.4547 -0.0232 16 1 11.5400 -4.1234 1.3784 17 1 12.3676 -4.9988 -0.7262 18 1 10.7111 -3.2277 -0.7172 19 6 2.1970 -1.1966 -0.0058 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8925 -0.5094 22 1 -0.3633 -0.8875 -0.5181 23 1 1.6565 2.1324 -0.0004 24 1 4.1176 2.1381 0.0098 25 1 5.3552 0.0102 0.0002 26 1 6.0278 -1.7576 -0.8990 27 1 6.0280 -1.7669 0.8810 28 1 5.9445 -4.2448 0.8688 29 1 5.9443 -4.2363 -0.9111 30 1 11.0397 -7.2950 -0.0367 31 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082692403.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:30 Heat of formation + Delta-G solvation = -49.555785 kcal Electronic energy + Delta-G solvation = -13665.745374 eV Core-core repulsion = 11230.313720 eV Total energy + Delta-G solvation = -2435.431654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12878 -38.71295 -34.73331 -33.45687 -33.06806 -30.57521 -28.05118 -27.82906 -24.75318 -23.47287 -21.84197 -19.71746 -18.88661 -17.27167 -17.15833 -17.07942 -16.84486 -15.97073 -15.13504 -14.95928 -14.93484 -14.61330 -14.20998 -14.14098 -13.47686 -13.09362 -13.06562 -12.82580 -12.73875 -12.59986 -12.35450 -11.89315 -11.76599 -11.73156 -11.19881 -10.73254 -9.73904 -9.16366 -9.08019 -8.55201 -6.30032 0.36378 0.48839 0.91227 1.31941 1.42191 1.52603 2.21404 2.41492 2.63285 2.79996 2.82655 3.71167 3.80573 3.91364 3.99455 4.14890 4.28070 4.37920 4.45271 4.55035 4.59596 4.77734 4.85789 4.89159 5.02929 5.25818 5.38518 5.50592 5.65242 5.66085 5.87968 6.07293 6.42074 6.86854 8.58040 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.064806 B = 0.004162 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.951769 B = 6726.082753 C = 7132.284748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.164 4.164 4 C -0.079 4.079 5 C -0.229 4.229 6 C 0.111 3.889 7 O -0.333 6.333 8 C 0.092 3.908 9 C -0.082 4.082 10 S -0.179 6.179 11 C -0.530 4.530 12 H 0.051 0.949 13 C 0.040 3.960 14 N -0.920 5.920 15 Si 0.926 3.074 16 H -0.259 1.259 17 H -0.261 1.261 18 H -0.225 1.225 19 C -0.175 4.175 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.070 0.930 23 H 0.150 0.850 24 H 0.150 0.850 25 H 0.132 0.868 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.279 0.721 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.284 18.658 0.003 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.053 4.053 3 C -0.182 4.182 4 C -0.096 4.096 5 C -0.247 4.247 6 C 0.065 3.935 7 O -0.247 6.247 8 C 0.016 3.984 9 C -0.230 4.230 10 S 0.048 5.952 11 C -0.678 4.678 12 H 0.069 0.931 13 C -0.165 4.165 14 N -0.557 5.557 15 Si 0.746 3.254 16 H -0.183 1.183 17 H -0.185 1.185 18 H -0.148 1.148 19 C -0.194 4.194 20 H 0.101 0.899 21 H 0.104 0.896 22 H 0.089 0.911 23 H 0.168 0.832 24 H 0.167 0.833 25 H 0.150 0.850 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.543 19.198 0.000 24.084 hybrid contribution 0.221 -1.614 0.045 1.630 sum -14.322 17.583 0.045 22.678 Atomic orbital electron populations 1.20869 0.88608 1.03961 1.03450 1.20084 0.97634 0.91736 0.95891 1.21316 0.94150 0.98407 1.04280 1.21288 0.94748 0.97663 0.95942 1.21503 1.01023 0.92531 1.09692 1.19365 0.92414 0.84820 0.96858 1.86020 1.20399 1.29504 1.88808 1.22366 0.77404 0.95605 1.03006 1.22977 0.95950 0.99307 1.04802 1.83581 1.02676 1.11283 1.97643 1.22297 0.96182 0.90050 1.59222 0.93073 1.25780 1.00663 0.97644 0.92442 1.70030 1.20716 1.16380 1.48601 0.85719 0.78795 0.80432 0.80453 1.18301 1.18491 1.14841 1.20543 0.90622 0.99732 1.08500 0.89908 0.89568 0.91086 0.83187 0.83267 0.84990 0.90351 0.90347 0.90891 0.90850 0.91172 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.05 -1.04 5.88 -19.88 -0.12 -1.16 16 3 C -0.16 -2.89 9.70 22.28 0.22 -2.68 16 4 C -0.08 -1.54 10.04 22.25 0.22 -1.31 16 5 C -0.23 -5.68 9.04 22.36 0.20 -5.48 16 6 C 0.11 3.18 6.69 22.51 0.15 3.34 16 7 O -0.33 -11.03 10.14 -92.52 -0.94 -11.97 16 8 C 0.09 3.00 4.74 71.98 0.34 3.34 16 9 C -0.08 -3.31 6.04 71.98 0.43 -2.87 16 10 S -0.18 -8.48 19.41 -56.49 -1.10 -9.57 16 11 C -0.53 -31.24 10.04 67.95 0.68 -30.56 16 12 H 0.05 3.31 8.03 -2.91 -0.02 3.28 16 13 C 0.04 2.33 5.50 84.86 0.47 2.80 16 14 N -0.92 -56.39 13.97 21.65 0.30 -56.09 16 15 Si 0.93 43.01 27.74 68.60 1.90 44.91 16 16 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 18 H -0.23 -9.93 6.74 99.48 0.67 -9.26 16 19 C -0.18 -4.40 9.64 22.37 0.22 -4.19 16 20 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.09 0.78 8.08 -2.39 -0.02 0.76 16 22 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 23 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 24 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 25 H 0.13 3.10 6.30 -2.91 -0.02 3.08 16 26 H 0.08 2.37 7.66 -2.39 -0.02 2.35 16 27 H 0.08 2.37 7.66 -2.38 -0.02 2.35 16 28 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -66.63 282.26 4.77 -61.86 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.07 Total: 10.34 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 3.53 Total: -39.48 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.30 Total: -56.09 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.94 Total: -11.97 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.90 Total: 44.91 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.10 Total: -9.57 kcal Total: -66.63 4.77 -61.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692403.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.309 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds