Wall clock time and date at job start Mon Mar 30 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 S 1.80995 * 109.47264 * 180.02562 * 8 7 6 10 10 C 1.76197 * 100.00223 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99881 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00168 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99987 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00016 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47450 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47386 * 120.00373 * 14 12 10 17 17 H 1.48504 * 109.46967 * 239.99870 * 14 12 10 18 18 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 19 19 C 1.38145 * 119.94323 * 359.49123 * 18 5 4 20 20 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 21 21 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 22 22 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 23 23 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 24 24 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 25 25 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 26 26 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 27 27 H 1.08999 * 109.47084 * 299.99957 * 8 7 6 28 28 H 1.08996 * 109.47090 * 59.99784 * 8 7 6 29 29 H 0.97002 * 120.00540 * 180.02562 * 13 12 10 30 30 H 1.08001 * 120.02769 * 179.72249 * 18 5 4 31 31 H 1.08006 * 119.97076 * 180.25587 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 16 8.6198 -2.6853 0.0027 10 6 10.3048 -2.1701 0.0026 11 1 10.5477 -1.1177 0.0022 12 6 11.3200 -3.1167 0.0031 13 7 11.0239 -4.3992 0.0031 14 14 13.1063 -2.5705 0.0023 15 1 13.1703 -1.0868 0.0017 16 1 13.7847 -3.0943 1.2149 17 1 13.7840 -3.0962 -1.2100 18 6 3.5787 -1.2007 -0.0033 19 6 2.1973 -1.1980 0.0014 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6558 2.1327 -0.0009 24 1 4.1172 2.1370 0.0001 25 1 5.9884 -1.8297 0.8924 26 1 5.9884 -1.8305 -0.8875 27 1 8.0913 -0.5158 -0.8873 28 1 8.0905 -0.5154 0.8926 29 1 11.7333 -5.0608 0.0038 30 1 4.1174 -2.1367 -0.0070 31 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082692404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:32 Heat of formation + Delta-G solvation = -32.986753 kcal Electronic energy + Delta-G solvation = -13601.271256 eV Core-core repulsion = 11166.558089 eV Total energy + Delta-G solvation = -2434.713167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.02019 -37.63291 -32.53671 -32.38363 -31.09224 -30.55008 -26.30005 -25.68145 -23.74368 -22.00687 -20.97053 -18.14491 -17.58450 -15.86300 -15.82146 -15.33935 -14.86321 -14.55544 -13.90983 -13.85539 -13.51996 -13.48635 -13.04605 -12.64576 -12.21754 -11.66880 -11.61742 -11.53909 -11.11050 -11.01369 -10.79370 -10.60981 -10.40617 -9.83051 -9.13328 -9.01037 -8.46582 -7.97943 -6.64675 -6.30447 -4.02605 1.33773 1.43508 2.89309 3.18364 3.24977 3.31072 3.75240 3.91484 4.15045 4.77272 4.81932 4.95873 5.06500 5.14833 5.26494 5.33059 5.35791 5.41919 5.46568 5.57494 5.69298 5.78407 5.82988 6.02834 6.26534 6.28760 6.40490 6.52599 6.57467 6.82782 7.55142 7.59716 8.30487 9.16175 10.77900 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.080266 B = 0.003818 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.756208 B = 7331.598494 C = 7654.606689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.137 4.137 3 C -0.083 4.083 4 C -0.155 4.155 5 C 0.135 3.865 6 O -0.316 6.316 7 C 0.081 3.919 8 C -0.119 4.119 9 S -0.114 6.114 10 C -0.517 4.517 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.869 5.869 14 Si 0.923 3.077 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.206 4.206 19 C -0.079 4.079 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.268 0.732 30 H 0.132 0.868 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.078 7.753 -0.019 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C -0.101 4.101 4 C -0.174 4.174 5 C 0.089 3.911 6 O -0.230 6.230 7 C 0.006 3.994 8 C -0.268 4.268 9 S 0.113 5.887 10 C -0.665 4.665 11 H 0.095 0.905 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.749 3.251 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.224 4.224 19 C -0.097 4.097 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.143 0.857 24 H 0.147 0.853 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.296 6.681 -0.018 18.542 hybrid contribution 1.681 1.226 -0.004 2.081 sum -15.615 7.907 -0.023 17.503 Atomic orbital electron populations 1.20684 0.91330 1.02381 1.01908 1.19781 0.96021 0.93138 1.04765 1.20788 0.92966 0.97587 0.98761 1.20438 0.93742 0.96405 1.06773 1.19101 0.82957 0.94037 0.95054 1.86097 1.15691 1.33331 1.87867 1.22612 0.92176 0.82779 1.01874 1.23294 0.94017 1.04879 1.04569 1.84563 1.04336 1.02844 1.96993 1.22713 0.89392 0.95495 1.58865 0.90537 1.25031 0.99807 0.94535 0.94388 1.70018 1.33418 1.00002 1.47038 0.86045 0.82242 0.78909 0.77938 1.19483 1.20488 1.20481 1.21374 0.95346 0.97614 1.08115 1.20824 0.93317 0.97587 0.98021 0.91662 0.91870 0.91901 0.85719 0.85338 0.91480 0.91475 0.90892 0.90888 0.92195 0.85057 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.14 -1.49 5.88 -104.60 -0.62 -2.11 16 3 C -0.08 -0.92 9.69 -39.61 -0.38 -1.30 16 4 C -0.15 -2.03 9.99 -39.44 -0.39 -2.42 16 5 C 0.13 2.04 6.69 -39.22 -0.26 1.78 16 6 O -0.32 -5.43 10.14 -19.44 -0.20 -5.62 16 7 C 0.08 1.42 4.74 37.16 0.18 1.60 16 8 C -0.12 -2.49 6.04 37.16 0.22 -2.27 16 9 S -0.11 -2.95 21.44 -107.50 -2.30 -5.25 16 10 C -0.52 -14.67 9.50 30.94 0.29 -14.38 16 11 H 0.08 2.12 7.80 -52.48 -0.41 1.71 16 12 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 13 N -0.87 -25.59 13.22 55.49 0.73 -24.85 16 14 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.21 -2.83 9.04 -39.44 -0.36 -3.19 16 19 C -0.08 -0.93 9.69 -39.61 -0.38 -1.32 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 22 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 23 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 24 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 25 H 0.07 1.13 7.67 -51.93 -0.40 0.73 16 26 H 0.07 1.13 7.65 -51.93 -0.40 0.73 16 27 H 0.07 1.52 8.14 -51.92 -0.42 1.10 16 28 H 0.07 1.52 8.14 -51.92 -0.42 1.10 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.13 1.74 6.30 -52.49 -0.33 1.41 16 31 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -30.58 284.94 -7.98 -38.56 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.05 Total: -1.28 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.44 Total: -22.16 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.73 Total: -24.85 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.20 Total: -5.62 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.30 Total: -5.25 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.58 -7.98 -38.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.577 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds