Wall clock time and date at job start Mon Mar 30 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 S 1.80995 * 109.47264 * 180.02562 * 8 7 6 10 10 C 1.76197 * 100.00223 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99881 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00168 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99987 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00016 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47450 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47386 * 120.00373 * 14 12 10 17 17 H 1.48504 * 109.46967 * 239.99870 * 14 12 10 18 18 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 19 19 C 1.38145 * 119.94323 * 359.49123 * 18 5 4 20 20 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 21 21 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 22 22 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 23 23 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 24 24 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 25 25 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 26 26 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 27 27 H 1.08999 * 109.47084 * 299.99957 * 8 7 6 28 28 H 1.08996 * 109.47090 * 59.99784 * 8 7 6 29 29 H 0.97002 * 120.00540 * 180.02562 * 13 12 10 30 30 H 1.08001 * 120.02769 * 179.72249 * 18 5 4 31 31 H 1.08006 * 119.97076 * 180.25587 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 16 8.6198 -2.6853 0.0027 10 6 10.3048 -2.1701 0.0026 11 1 10.5477 -1.1177 0.0022 12 6 11.3200 -3.1167 0.0031 13 7 11.0239 -4.3992 0.0031 14 14 13.1063 -2.5705 0.0023 15 1 13.1703 -1.0868 0.0017 16 1 13.7847 -3.0943 1.2149 17 1 13.7840 -3.0962 -1.2100 18 6 3.5787 -1.2007 -0.0033 19 6 2.1973 -1.1980 0.0014 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6558 2.1327 -0.0009 24 1 4.1172 2.1370 0.0001 25 1 5.9884 -1.8297 0.8924 26 1 5.9884 -1.8305 -0.8875 27 1 8.0913 -0.5158 -0.8873 28 1 8.0905 -0.5154 0.8926 29 1 11.7333 -5.0608 0.0038 30 1 4.1174 -2.1367 -0.0070 31 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082692404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:32 Heat of formation + Delta-G solvation = -49.887343 kcal Electronic energy + Delta-G solvation = -13602.004121 eV Core-core repulsion = 11166.558089 eV Total energy + Delta-G solvation = -2435.446032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.10838 -38.72036 -34.66286 -33.51447 -32.11848 -31.76541 -27.87474 -27.11919 -25.05439 -23.12108 -22.01718 -19.65954 -19.30076 -17.23722 -16.95205 -16.92617 -16.31236 -16.07977 -15.24926 -14.86067 -14.75527 -14.41439 -14.38667 -14.19849 -13.42116 -12.98562 -12.97351 -12.71690 -12.67615 -12.61395 -12.39240 -11.77119 -11.66944 -11.66407 -11.19307 -10.49467 -9.95991 -9.00270 -8.75649 -8.42689 -6.20758 0.38798 0.45584 1.17076 1.38263 1.40794 1.54499 2.20224 2.50312 2.79453 2.92623 3.24433 3.75585 3.83918 3.95406 3.98543 4.09722 4.28377 4.40084 4.46351 4.64127 4.64222 4.83768 4.85627 4.92122 5.10835 5.20319 5.36966 5.38804 5.43180 5.69173 5.89502 6.14242 6.42558 6.99945 8.67104 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.080266 B = 0.003818 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.756208 B = 7331.598494 C = 7654.606689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.082 4.082 4 C -0.164 4.164 5 C 0.099 3.901 6 O -0.331 6.331 7 C 0.096 3.904 8 C -0.099 4.099 9 S -0.159 6.159 10 C -0.542 4.542 11 H 0.075 0.925 12 C 0.018 3.982 13 N -0.905 5.905 14 Si 0.998 3.002 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.270 1.270 18 C -0.218 4.218 19 C -0.087 4.087 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.156 0.844 24 H 0.135 0.865 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.274 0.726 30 H 0.128 0.872 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.289 8.827 -0.015 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C -0.100 4.100 4 C -0.182 4.182 5 C 0.054 3.946 6 O -0.246 6.246 7 C 0.020 3.980 8 C -0.247 4.247 9 S 0.068 5.932 10 C -0.690 4.690 11 H 0.093 0.907 12 C -0.187 4.187 13 N -0.541 5.541 14 Si 0.819 3.181 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.195 1.195 18 C -0.237 4.237 19 C -0.105 4.105 20 H 0.095 0.905 21 H 0.091 0.909 22 H 0.096 0.904 23 H 0.173 0.827 24 H 0.153 0.847 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.535 7.758 -0.015 20.093 hybrid contribution 1.866 0.948 -0.007 2.093 sum -16.669 8.706 -0.021 18.806 Atomic orbital electron populations 1.20759 0.88766 1.03678 1.03003 1.20246 0.97909 0.92616 1.02491 1.21177 0.92175 0.99156 0.97499 1.20699 0.94818 0.96005 1.06700 1.19417 0.81966 0.95469 0.97784 1.86018 1.17304 1.32448 1.88862 1.22295 0.89996 0.83408 1.02346 1.23103 0.95927 1.01436 1.04259 1.84466 1.04474 1.07137 1.97122 1.23063 0.90736 0.95722 1.59478 0.90708 1.26069 1.04707 0.94464 0.93470 1.70130 1.35179 1.01238 1.47593 0.84918 0.75995 0.78738 0.78421 1.18754 1.19504 1.19499 1.21486 0.96454 0.97075 1.08688 1.21147 0.92607 0.99181 0.97565 0.90521 0.90906 0.90394 0.82662 0.84708 0.91055 0.91044 0.91123 0.91116 0.91696 0.85418 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.13 -2.53 5.88 -19.85 -0.12 -2.65 16 3 C -0.08 -1.62 9.69 22.25 0.22 -1.41 16 4 C -0.16 -4.13 9.99 22.36 0.22 -3.90 16 5 C 0.10 2.98 6.69 22.50 0.15 3.13 16 6 O -0.33 -11.53 10.14 -92.48 -0.94 -12.47 16 7 C 0.10 3.41 4.74 71.98 0.34 3.75 16 8 C -0.10 -4.19 6.04 71.98 0.43 -3.76 16 9 S -0.16 -8.43 21.44 -56.49 -1.21 -9.64 16 10 C -0.54 -31.25 9.50 67.95 0.65 -30.61 16 11 H 0.07 4.19 7.80 -2.91 -0.02 4.16 16 12 C 0.02 1.03 5.49 84.86 0.47 1.50 16 13 N -0.91 -53.83 13.22 21.65 0.29 -53.55 16 14 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 15 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 C -0.22 -5.93 9.04 22.36 0.20 -5.73 16 19 C -0.09 -1.90 9.69 22.25 0.22 -1.69 16 20 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 21 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 22 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 23 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 24 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 25 H 0.07 2.45 7.67 -2.39 -0.02 2.43 16 26 H 0.07 2.45 7.65 -2.39 -0.02 2.43 16 27 H 0.07 3.00 8.14 -2.40 -0.02 2.98 16 28 H 0.07 3.01 8.14 -2.40 -0.02 2.99 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.13 3.43 6.30 -2.91 -0.02 3.41 16 31 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -65.92 284.94 4.76 -61.16 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.11 Total: 10.76 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 3.49 Total: -41.92 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.29 Total: -53.55 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.94 Total: -12.47 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.21 Total: -9.64 kcal Total: -65.92 4.76 -61.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.274 kcal (2) G-P(sol) polarization free energy of solvation -65.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds