Wall clock time and date at job start Mon Mar 30 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86792 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47283 * 269.99534 * 3 2 1 5 5 H 1.48497 * 109.47482 * 29.99601 * 3 2 1 6 6 H 1.48498 * 109.47378 * 149.99632 * 3 2 1 7 7 C 1.38796 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00200 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00188 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46842 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47181 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47386 * 180.02562 * 12 11 10 14 14 C 1.35898 * 116.99694 * 180.02562 * 13 12 11 15 15 C 1.38735 * 120.05254 * 179.97438 * 14 13 12 16 16 C 1.38144 * 119.94607 * 179.97438 * 15 14 13 17 17 C 1.38266 * 120.05233 * 0.02562 * 16 15 14 18 18 C 1.38269 * 120.11595 * 359.95530 * 17 16 15 19 19 C 1.38142 * 120.04935 * 0.04230 * 18 17 16 20 20 H 0.97002 * 119.99760 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46927 * 60.00012 * 10 9 7 22 22 H 1.08993 * 109.47132 * 299.99987 * 10 9 7 23 23 H 1.08999 * 109.47370 * 60.00259 * 11 10 9 24 24 H 1.09006 * 109.47017 * 300.00101 * 11 10 9 25 25 H 1.08999 * 109.46920 * 59.99785 * 12 11 10 26 26 H 1.08998 * 109.47220 * 300.00155 * 12 11 10 27 27 H 1.08002 * 120.02704 * 359.70561 * 15 14 13 28 28 H 1.08001 * 119.97447 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.94089 * 179.97438 * 17 16 15 30 30 H 1.07992 * 119.97577 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.02748 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5957 -3.2363 0.0039 12 6 5.8615 -4.7431 0.0044 13 8 7.2710 -4.9782 0.0063 14 6 7.6802 -6.2741 0.0064 15 6 9.0346 -6.5750 0.0077 16 6 9.4481 -7.8931 0.0083 17 6 8.5135 -8.9121 0.0072 18 6 7.1631 -8.6148 0.0063 19 6 6.7446 -7.2984 0.0057 20 1 -0.4850 0.8401 -0.0004 21 1 3.6440 -3.4322 -0.8873 22 1 3.6434 -3.4310 0.8926 23 1 6.0380 -2.7888 0.8940 24 1 6.0394 -2.7897 -0.8860 25 1 5.4193 -5.1902 -0.8859 26 1 5.4177 -5.1900 0.8940 27 1 9.7650 -5.7795 0.0038 28 1 10.5023 -8.1279 0.0089 29 1 8.8388 -9.9419 0.0072 30 1 6.4351 -9.4125 0.0058 31 1 5.6897 -7.0666 0.0046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082692408.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:01 Heat of formation + Delta-G solvation = -32.241025 kcal Electronic energy + Delta-G solvation = -13530.807364 eV Core-core repulsion = 11096.126534 eV Total energy + Delta-G solvation = -2434.680830 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.16558 -37.59384 -33.69377 -32.47443 -31.15162 -29.90154 -26.54774 -25.62540 -23.01669 -22.24504 -21.10174 -18.38794 -17.42522 -16.28206 -16.25989 -15.86737 -15.02304 -14.58475 -14.36868 -14.19772 -13.59924 -13.24587 -12.85785 -12.66125 -12.36864 -11.75823 -11.66174 -11.42596 -11.21136 -11.04387 -10.83416 -10.50017 -10.31545 -9.84120 -9.17836 -9.04134 -8.62842 -8.32457 -6.99917 -6.31928 -4.05284 1.16692 1.29927 2.82307 3.20673 3.28408 3.43351 3.60110 3.63526 4.28547 4.65807 4.71566 4.75953 4.95497 4.99416 5.07132 5.08644 5.21457 5.30829 5.35388 5.46049 5.64768 5.71026 5.84206 6.06167 6.17652 6.25231 6.32196 6.35309 6.49693 6.64148 7.35869 7.91703 8.40253 9.13634 10.77476 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.073666 B = 0.003723 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.000273 B = 7518.544034 C = 7872.796623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.092 3.908 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.100 4.100 12 C 0.064 3.936 13 O -0.314 6.314 14 C 0.136 3.864 15 C -0.157 4.157 16 C -0.083 4.083 17 C -0.166 4.166 18 C -0.080 4.080 19 C -0.211 4.211 20 H 0.271 0.729 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.925 -14.658 0.092 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.652 4.652 8 H 0.107 0.893 9 S 0.021 5.979 10 C -0.232 4.232 11 C -0.139 4.139 12 C -0.013 4.013 13 O -0.228 6.228 14 C 0.090 3.910 15 C -0.176 4.176 16 C -0.101 4.101 17 C -0.184 4.184 18 C -0.099 4.099 19 C -0.230 4.230 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.562 -13.477 0.094 21.353 hybrid contribution -1.072 -0.382 -0.035 1.139 sum 15.490 -13.859 0.060 20.785 Atomic orbital electron populations 1.69939 1.05926 1.27787 1.48096 1.24790 0.94521 0.99045 0.93264 0.86671 0.81750 0.83173 0.79770 1.19306 1.20022 1.16127 1.22118 0.86979 0.97488 1.58650 0.89340 1.84204 1.11767 1.04367 1.97545 1.22943 0.96093 1.00095 1.04066 1.21290 0.95786 0.92402 1.04407 1.22953 0.78452 0.98371 1.01506 1.86077 1.26127 1.22535 1.88011 1.19103 0.93514 0.83386 0.95006 1.20483 0.93083 0.97246 1.06746 1.20954 0.99640 0.91767 0.97721 1.21040 0.93143 0.99243 1.04984 1.20965 0.96006 0.95714 0.97171 1.21360 0.99700 0.93259 1.08632 0.91906 0.91091 0.91054 0.90291 0.90312 0.91841 0.91846 0.85234 0.85535 0.86106 0.85884 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.59 16 3 Si 0.86 21.41 27.74 -169.99 -4.71 16.69 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 7 C -0.50 -14.53 10.04 30.94 0.31 -14.22 16 8 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 9 S -0.21 -4.99 19.41 -107.50 -2.09 -7.08 16 10 C -0.08 -1.57 5.67 37.16 0.21 -1.36 16 11 C -0.10 -1.55 5.59 -26.73 -0.15 -1.70 16 12 C 0.06 0.84 4.74 37.16 0.18 1.02 16 13 O -0.31 -4.42 10.14 -19.42 -0.20 -4.61 16 14 C 0.14 1.73 6.69 -39.22 -0.26 1.47 16 15 C -0.16 -1.75 9.99 -39.43 -0.39 -2.15 16 16 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 17 C -0.17 -1.51 10.04 -39.56 -0.40 -1.90 16 18 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 19 C -0.21 -2.41 9.04 -39.44 -0.36 -2.77 16 20 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 22 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 23 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 26 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 1.36 6.30 -52.48 -0.33 1.03 16 LS Contribution 282.35 15.07 4.25 4.25 Total: -1.00 -31.02 282.35 -7.81 -38.83 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.09 Total: -0.89 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -1.75 Total: -21.38 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.78 Total: -25.82 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.20 Total: -4.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.69 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -2.09 Total: -7.08 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.02 -7.81 -38.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692408.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.584 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds