Wall clock time and date at job start Mon Mar 30 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86792 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47283 * 269.99534 * 3 2 1 5 5 H 1.48497 * 109.47482 * 29.99601 * 3 2 1 6 6 H 1.48498 * 109.47378 * 149.99632 * 3 2 1 7 7 C 1.38796 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00200 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00188 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46842 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47181 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47386 * 180.02562 * 12 11 10 14 14 C 1.35898 * 116.99694 * 180.02562 * 13 12 11 15 15 C 1.38735 * 120.05254 * 179.97438 * 14 13 12 16 16 C 1.38144 * 119.94607 * 179.97438 * 15 14 13 17 17 C 1.38266 * 120.05233 * 0.02562 * 16 15 14 18 18 C 1.38269 * 120.11595 * 359.95530 * 17 16 15 19 19 C 1.38142 * 120.04935 * 0.04230 * 18 17 16 20 20 H 0.97002 * 119.99760 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46927 * 60.00012 * 10 9 7 22 22 H 1.08993 * 109.47132 * 299.99987 * 10 9 7 23 23 H 1.08999 * 109.47370 * 60.00259 * 11 10 9 24 24 H 1.09006 * 109.47017 * 300.00101 * 11 10 9 25 25 H 1.08999 * 109.46920 * 59.99785 * 12 11 10 26 26 H 1.08998 * 109.47220 * 300.00155 * 12 11 10 27 27 H 1.08002 * 120.02704 * 359.70561 * 15 14 13 28 28 H 1.08001 * 119.97447 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.94089 * 179.97438 * 17 16 15 30 30 H 1.07992 * 119.97577 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.02748 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5957 -3.2363 0.0039 12 6 5.8615 -4.7431 0.0044 13 8 7.2710 -4.9782 0.0063 14 6 7.6802 -6.2741 0.0064 15 6 9.0346 -6.5750 0.0077 16 6 9.4481 -7.8931 0.0083 17 6 8.5135 -8.9121 0.0072 18 6 7.1631 -8.6148 0.0063 19 6 6.7446 -7.2984 0.0057 20 1 -0.4850 0.8401 -0.0004 21 1 3.6440 -3.4322 -0.8873 22 1 3.6434 -3.4310 0.8926 23 1 6.0380 -2.7888 0.8940 24 1 6.0394 -2.7897 -0.8860 25 1 5.4193 -5.1902 -0.8859 26 1 5.4177 -5.1900 0.8940 27 1 9.7650 -5.7795 0.0038 28 1 10.5023 -8.1279 0.0089 29 1 8.8388 -9.9419 0.0072 30 1 6.4351 -9.4125 0.0058 31 1 5.6897 -7.0666 0.0046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082692408.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:01 Heat of formation + Delta-G solvation = -49.970111 kcal Electronic energy + Delta-G solvation = -13531.576154 eV Core-core repulsion = 11096.126534 eV Total energy + Delta-G solvation = -2435.449621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04537 -38.46590 -34.97459 -34.69473 -31.91962 -30.74479 -28.13181 -27.47824 -23.96376 -23.13109 -22.20699 -19.72580 -19.11066 -17.34747 -17.22194 -17.09522 -16.72644 -15.96273 -15.46969 -15.33566 -14.95766 -14.44623 -14.28684 -13.83599 -13.66571 -13.36128 -13.05792 -12.71242 -12.50793 -12.46230 -12.17039 -11.80317 -11.66164 -11.63003 -11.17840 -10.61011 -9.94211 -9.16713 -9.02372 -8.53448 -6.25633 0.40367 0.50344 1.07847 1.31752 1.46705 1.63405 2.23169 2.27930 2.66256 2.84764 2.86162 3.83437 3.84217 3.97903 4.07384 4.09165 4.27633 4.30429 4.38094 4.51196 4.57067 4.65917 4.77610 4.98387 5.10351 5.12945 5.39008 5.49888 5.61250 5.68276 5.88560 6.08831 6.44803 6.90542 8.59551 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.073666 B = 0.003723 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.000273 B = 7518.544034 C = 7872.796623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.038 3.962 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.229 1.229 7 C -0.523 4.523 8 H 0.053 0.947 9 S -0.214 6.214 10 C -0.070 4.070 11 C -0.090 4.090 12 C 0.071 3.929 13 O -0.331 6.331 14 C 0.106 3.894 15 C -0.171 4.171 16 C -0.083 4.083 17 C -0.164 4.164 18 C -0.088 4.088 19 C -0.224 4.224 20 H 0.277 0.723 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.134 0.866 28 H 0.155 0.845 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.941 -15.577 0.115 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.166 4.166 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.152 1.152 7 C -0.671 4.671 8 H 0.071 0.929 9 S 0.013 5.987 10 C -0.219 4.219 11 C -0.128 4.128 12 C -0.005 4.005 13 O -0.245 6.245 14 C 0.061 3.939 15 C -0.190 4.190 16 C -0.100 4.100 17 C -0.182 4.182 18 C -0.106 4.106 19 C -0.243 4.243 20 H 0.087 0.913 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.152 0.848 28 H 0.173 0.827 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.583 -14.413 0.119 23.517 hybrid contribution -1.658 -0.301 -0.047 1.686 sum 16.925 -14.713 0.072 22.426 Atomic orbital electron populations 1.70037 1.07638 1.29168 1.49122 1.25766 0.95411 1.02767 0.92703 0.85724 0.80775 0.78670 0.80262 1.18572 1.18703 1.15217 1.22335 0.89914 0.96380 1.58466 0.92863 1.83911 1.07698 1.09441 1.97601 1.22956 0.98689 0.95870 1.04367 1.21119 0.92940 0.94362 1.04407 1.22765 0.78817 0.96474 1.02454 1.86009 1.25986 1.23783 1.88736 1.19396 0.94505 0.82986 0.97021 1.20745 0.92691 0.98476 1.07084 1.21331 1.01298 0.90948 0.96460 1.21453 0.92791 1.00654 1.03313 1.21309 0.97126 0.95588 0.96530 1.21528 0.99778 0.93883 1.09119 0.91342 0.90811 0.90784 0.90317 0.90310 0.90941 0.90951 0.84812 0.82743 0.83334 0.83763 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.60 13.97 21.65 0.30 -56.30 16 2 C 0.04 2.25 5.50 84.86 0.47 2.71 16 3 Si 0.92 43.96 27.74 68.60 1.90 45.86 16 4 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.23 -10.48 6.74 99.48 0.67 -9.81 16 7 C -0.52 -30.68 10.04 67.95 0.68 -30.00 16 8 H 0.05 3.38 8.03 -2.91 -0.02 3.35 16 9 S -0.21 -10.25 19.41 -56.49 -1.10 -11.35 16 10 C -0.07 -2.61 5.67 71.98 0.41 -2.20 16 11 C -0.09 -2.67 5.59 30.59 0.17 -2.50 16 12 C 0.07 1.81 4.74 71.98 0.34 2.15 16 13 O -0.33 -9.07 10.14 -92.40 -0.94 -10.01 16 14 C 0.11 2.61 6.69 22.51 0.15 2.76 16 15 C -0.17 -3.60 9.99 22.37 0.22 -3.38 16 16 C -0.08 -1.33 10.04 22.25 0.22 -1.10 16 17 C -0.16 -2.49 10.04 22.28 0.22 -2.27 16 18 C -0.09 -1.52 10.04 22.25 0.22 -1.30 16 19 C -0.22 -4.86 9.04 22.36 0.20 -4.66 16 20 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 21 H 0.07 2.70 8.14 -2.40 -0.02 2.68 16 22 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 23 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 25 H 0.07 1.69 7.66 -2.39 -0.02 1.67 16 26 H 0.07 1.69 7.66 -2.39 -0.02 1.67 16 27 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 29 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.13 2.64 6.30 -2.91 -0.02 2.62 16 Total: -1.00 -66.94 282.35 4.55 -62.38 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.06 Total: 9.19 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 3.32 Total: -39.77 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.30 Total: -56.30 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.94 Total: -10.01 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.86 kcal Atomic # 16 Polarization: -10.25 SS G_CDS: -1.10 Total: -11.35 kcal Total: -66.94 4.55 -62.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692408.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.414 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds