Wall clock time and date at job start Mon Mar 30 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00284 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50699 * 120.00214 * 180.28376 * 6 5 4 8 8 S 1.81408 * 109.46762 * 270.17073 * 7 6 5 9 9 O 1.42098 * 109.46830 * 63.61093 * 8 7 6 10 10 C 1.81400 * 102.99600 * 179.97438 * 8 7 6 11 11 C 1.50709 * 109.46896 * 179.97438 * 10 8 7 12 12 H 1.07998 * 119.99715 * 0.02562 * 11 10 8 13 13 C 1.37872 * 119.99807 * 179.97438 * 11 10 8 14 14 N 1.31508 * 120.00435 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99811 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47318 * 90.00147 * 15 13 11 17 17 H 1.48499 * 109.47143 * 210.00423 * 15 13 11 18 18 H 1.48504 * 109.47341 * 330.00366 * 15 13 11 19 19 C 1.38216 * 119.99971 * 179.97438 * 2 1 3 20 20 H 1.08995 * 109.47498 * 89.99606 * 1 2 3 21 21 H 1.08999 * 109.46948 * 210.00269 * 1 2 3 22 22 H 1.09009 * 109.46815 * 329.99242 * 1 2 3 23 23 H 1.07999 * 119.99759 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 25 25 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 26 26 H 1.09003 * 109.47192 * 30.16258 * 7 6 5 27 27 H 1.08994 * 109.47503 * 150.16720 * 7 6 5 28 28 H 1.08994 * 109.47232 * 299.99509 * 10 8 7 29 29 H 1.09004 * 109.47391 * 60.00230 * 10 8 7 30 30 H 0.97005 * 120.00291 * 180.02562 * 14 13 11 31 31 H 1.08002 * 119.99734 * 359.97270 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 0.0000 8 16 4.6359 -3.0267 -1.7102 9 8 5.4733 -2.0775 -2.3559 10 6 5.5377 -4.5872 -1.5051 11 6 5.8665 -5.1591 -2.8602 12 1 5.5635 -4.6359 -3.7550 13 6 6.5549 -6.3498 -2.9573 14 7 6.9242 -6.9866 -1.8676 15 14 6.9630 -7.0583 -4.6368 16 1 8.2832 -6.5453 -5.0831 17 1 7.0111 -8.5400 -4.5505 18 1 5.9190 -6.6530 -5.6121 19 6 2.1981 -1.1970 0.0005 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5140 23 1 1.6583 2.1326 -0.0004 24 1 4.1204 2.1326 0.0010 25 1 5.3517 -0.0001 -0.0091 26 1 5.2867 -2.3715 0.5134 27 1 3.7452 -3.2615 0.5144 28 1 6.4602 -4.4040 -0.9542 29 1 4.9190 -5.2946 -0.9530 30 1 7.4089 -7.8241 -1.9359 31 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:21 Heat of formation + Delta-G solvation = -31.777743 kcal Electronic energy + Delta-G solvation = -14011.882446 eV Core-core repulsion = 11577.221705 eV Total energy + Delta-G solvation = -2434.660741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.22802 -34.64482 -33.36304 -33.12710 -31.80669 -28.64692 -27.24900 -26.51014 -23.17442 -21.94837 -20.54425 -16.80580 -16.43860 -16.24268 -15.36782 -15.00656 -14.68951 -14.27469 -13.65196 -13.60208 -13.21293 -12.96991 -12.65179 -12.33789 -12.24837 -11.85715 -11.81523 -11.21519 -10.99863 -10.93995 -10.82756 -10.67870 -10.33433 -9.58909 -9.31680 -8.59021 -8.57643 -8.22297 -7.17457 -6.18634 -4.25276 1.41675 1.52650 2.56548 3.26265 3.32201 3.36490 3.76418 3.96208 4.34011 4.67632 4.89523 4.94897 5.03275 5.19287 5.26510 5.36544 5.53035 5.57707 5.68652 5.78204 5.82443 5.99971 6.24719 6.28412 6.61460 6.67952 6.80741 7.00984 7.10523 7.16369 7.68113 8.00439 8.78967 9.39709 10.93289 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.049925 B = 0.005059 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.707385 B = 5532.877475 C = 5632.055230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.042 4.042 7 C -0.422 4.422 8 S 1.205 4.795 9 O -0.858 6.858 10 C -0.256 4.256 11 C -0.515 4.515 12 H 0.064 0.936 13 C 0.068 3.932 14 N -0.888 5.888 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.268 1.268 19 C -0.120 4.120 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.264 0.736 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 10.334 5.030 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.152 4.152 4 C -0.131 4.131 5 C -0.139 4.139 6 C -0.043 4.043 7 C -0.554 4.554 8 S 1.406 4.594 9 O -0.854 6.854 10 C -0.397 4.397 11 C -0.554 4.554 12 H 0.083 0.917 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.727 3.273 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.139 4.139 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.135 0.865 24 H 0.136 0.864 25 H 0.135 0.865 26 H 0.105 0.895 27 H 0.137 0.863 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.058 10.666 4.289 17.398 hybrid contribution 2.486 -0.264 0.434 2.538 sum -10.572 10.401 4.723 15.565 Atomic orbital electron populations 1.20773 0.91284 1.02499 1.02325 1.19863 0.95901 0.93121 0.99862 1.20940 0.94131 0.97362 1.02757 1.21058 0.94319 0.97700 1.00062 1.21084 1.00029 0.92197 1.00607 1.19243 0.93466 0.93405 0.98209 1.26911 1.04413 1.00367 1.23746 1.70043 1.16516 0.88583 0.84230 1.93018 1.72482 1.57669 1.62201 1.24934 1.04723 1.06800 1.03263 1.20463 1.38121 1.06715 0.90146 0.91741 1.24981 0.94935 0.96537 0.97198 1.69964 1.38161 1.16563 1.27824 0.86450 0.79196 0.78063 0.83582 1.20446 1.20872 1.19259 1.20948 0.93128 0.97910 1.01939 0.91126 0.91480 0.91917 0.86482 0.86364 0.86472 0.89468 0.86278 0.94310 0.90931 0.92614 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.09 -1.05 5.88 -104.62 -0.62 -1.67 16 3 C -0.13 -1.63 9.70 -39.58 -0.38 -2.01 16 4 C -0.11 -1.54 10.05 -39.58 -0.40 -1.94 16 5 C -0.12 -1.93 9.70 -39.58 -0.38 -2.31 16 6 C -0.04 -0.66 5.14 -104.63 -0.54 -1.20 16 7 C -0.42 -6.87 6.05 36.01 0.22 -6.66 16 8 S 1.20 23.84 13.06 -107.50 -1.40 22.43 16 9 O -0.86 -21.98 18.14 -35.23 -0.64 -22.62 16 10 C -0.26 -6.32 5.68 36.01 0.20 -6.12 16 11 C -0.52 -14.38 9.13 -34.44 -0.31 -14.69 16 12 H 0.06 1.76 7.71 -52.49 -0.40 1.36 16 13 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 14 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 15 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.12 -1.58 9.36 -39.58 -0.37 -1.95 16 20 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 22 H 0.06 0.46 8.09 -51.92 -0.42 0.04 16 23 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 24 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 26 H 0.09 1.51 8.09 -51.92 -0.42 1.09 16 27 H 0.12 1.59 8.08 -51.93 -0.42 1.17 16 28 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 286.52 15.07 4.32 4.32 Total: -1.00 -34.90 286.52 -8.51 -43.40 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.18 Total: -1.32 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: -2.32 Total: -37.34 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.64 Total: -22.62 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 23.84 SS G_CDS: -1.40 Total: 22.43 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.90 -8.51 -43.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.626 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds