Wall clock time and date at job start Mon Mar 30 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00284 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50699 * 120.00214 * 180.28376 * 6 5 4 8 8 S 1.81408 * 109.46762 * 270.17073 * 7 6 5 9 9 O 1.42098 * 109.46830 * 63.61093 * 8 7 6 10 10 C 1.81400 * 102.99600 * 179.97438 * 8 7 6 11 11 C 1.50709 * 109.46896 * 179.97438 * 10 8 7 12 12 H 1.07998 * 119.99715 * 0.02562 * 11 10 8 13 13 C 1.37872 * 119.99807 * 179.97438 * 11 10 8 14 14 N 1.31508 * 120.00435 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99811 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47318 * 90.00147 * 15 13 11 17 17 H 1.48499 * 109.47143 * 210.00423 * 15 13 11 18 18 H 1.48504 * 109.47341 * 330.00366 * 15 13 11 19 19 C 1.38216 * 119.99971 * 179.97438 * 2 1 3 20 20 H 1.08995 * 109.47498 * 89.99606 * 1 2 3 21 21 H 1.08999 * 109.46948 * 210.00269 * 1 2 3 22 22 H 1.09009 * 109.46815 * 329.99242 * 1 2 3 23 23 H 1.07999 * 119.99759 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 25 25 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 26 26 H 1.09003 * 109.47192 * 30.16258 * 7 6 5 27 27 H 1.08994 * 109.47503 * 150.16720 * 7 6 5 28 28 H 1.08994 * 109.47232 * 299.99509 * 10 8 7 29 29 H 1.09004 * 109.47391 * 60.00230 * 10 8 7 30 30 H 0.97005 * 120.00291 * 180.02562 * 14 13 11 31 31 H 1.08002 * 119.99734 * 359.97270 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 0.0000 8 16 4.6359 -3.0267 -1.7102 9 8 5.4733 -2.0775 -2.3559 10 6 5.5377 -4.5872 -1.5051 11 6 5.8665 -5.1591 -2.8602 12 1 5.5635 -4.6359 -3.7550 13 6 6.5549 -6.3498 -2.9573 14 7 6.9242 -6.9866 -1.8676 15 14 6.9630 -7.0583 -4.6368 16 1 8.2832 -6.5453 -5.0831 17 1 7.0111 -8.5400 -4.5505 18 1 5.9190 -6.6530 -5.6121 19 6 2.1981 -1.1970 0.0005 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5140 23 1 1.6583 2.1326 -0.0004 24 1 4.1204 2.1326 0.0010 25 1 5.3517 -0.0001 -0.0091 26 1 5.2867 -2.3715 0.5134 27 1 3.7452 -3.2615 0.5144 28 1 6.4602 -4.4040 -0.9542 29 1 4.9190 -5.2946 -0.9530 30 1 7.4089 -7.8241 -1.9359 31 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:21 Heat of formation + Delta-G solvation = -54.770773 kcal Electronic energy + Delta-G solvation = -14012.879498 eV Core-core repulsion = 11577.221705 eV Total energy + Delta-G solvation = -2435.657793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26020 -36.54576 -35.24902 -34.39662 -32.83938 -30.70291 -28.33204 -27.51859 -25.22076 -22.98760 -21.62848 -18.71977 -18.27085 -17.34621 -16.82668 -16.46459 -15.98306 -15.87704 -15.20478 -14.86005 -14.46564 -14.22417 -14.05615 -13.84787 -13.59574 -13.20448 -12.94027 -12.84987 -12.74296 -12.50972 -12.22619 -11.99596 -11.83002 -11.63008 -10.94437 -10.70888 -9.64999 -9.51250 -8.87709 -8.31747 -6.45955 0.23493 0.49123 1.05919 1.38378 1.40137 1.52223 2.07722 2.35853 2.87958 2.99477 3.12540 3.74811 3.88785 4.07917 4.26591 4.31822 4.55417 4.65247 4.73322 4.87809 4.92962 4.98914 5.04711 5.10121 5.23546 5.39296 5.53059 5.55894 5.68655 5.72912 5.92179 6.15637 6.67768 7.23292 8.80891 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.049925 B = 0.005059 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.707385 B = 5532.877475 C = 5632.055230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.122 4.122 5 C -0.153 4.153 6 C -0.070 4.070 7 C -0.407 4.407 8 S 1.272 4.728 9 O -0.920 6.920 10 C -0.271 4.271 11 C -0.540 4.540 12 H 0.064 0.936 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.964 3.036 16 H -0.282 1.282 17 H -0.271 1.271 18 H -0.253 1.253 19 C -0.121 4.121 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.148 0.852 24 H 0.135 0.865 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.156 0.844 28 H -0.001 1.001 29 H 0.080 0.920 30 H 0.268 0.732 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.630 10.979 4.898 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.172 4.172 6 C -0.071 4.071 7 C -0.542 4.542 8 S 1.476 4.524 9 O -0.916 6.916 10 C -0.410 4.410 11 C -0.579 4.579 12 H 0.082 0.918 13 C -0.188 4.188 14 N -0.561 5.561 15 Si 0.788 3.212 16 H -0.208 1.208 17 H -0.195 1.195 18 H -0.176 1.176 19 C -0.140 4.140 20 H 0.100 0.900 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.166 0.834 24 H 0.153 0.847 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.174 0.826 28 H 0.018 0.982 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.786 11.282 4.122 19.836 hybrid contribution 3.222 -0.299 0.634 3.298 sum -12.563 10.983 4.756 17.352 Atomic orbital electron populations 1.20857 0.88405 1.04036 1.03450 1.20351 0.97978 0.92476 0.97901 1.21378 0.93532 0.99030 1.00919 1.21312 0.95429 0.97443 0.99809 1.21164 0.99336 0.93864 1.02872 1.19273 0.94758 0.92331 1.00752 1.26711 1.04778 1.02433 1.20303 1.69137 1.12726 0.84882 0.85636 1.92897 1.73120 1.59257 1.66355 1.25070 1.03743 1.10638 1.01570 1.20917 1.38331 1.07166 0.91493 0.91823 1.25927 0.94723 0.97000 1.01191 1.70068 1.38935 1.17101 1.30040 0.85454 0.78915 0.77797 0.79071 1.20780 1.19530 1.17617 1.21320 0.92002 0.99947 1.00782 0.90026 0.90152 0.90334 0.83395 0.84732 0.88778 0.90930 0.82615 0.98247 0.90179 0.92314 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 2 C -0.09 -1.78 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 4 C -0.12 -3.18 10.05 22.27 0.22 -2.95 16 5 C -0.15 -4.96 9.70 22.27 0.22 -4.74 16 6 C -0.07 -2.12 5.14 -19.87 -0.10 -2.23 16 7 C -0.41 -13.07 6.05 71.24 0.43 -12.64 16 8 S 1.27 50.99 13.06 -56.49 -0.74 50.25 16 9 O -0.92 -48.61 18.14 -148.98 -2.70 -51.31 16 10 C -0.27 -13.83 5.68 71.24 0.40 -13.42 16 11 C -0.54 -30.82 9.13 25.60 0.23 -30.58 16 12 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 13 C 0.01 0.70 5.46 84.65 0.46 1.16 16 14 N -0.92 -55.06 13.29 21.44 0.28 -54.78 16 15 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 19 C -0.12 -2.86 9.36 22.27 0.21 -2.65 16 20 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 21 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 22 H 0.08 0.78 8.09 -2.38 -0.02 0.76 16 23 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 24 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 25 H 0.09 3.36 8.06 -2.91 -0.02 3.33 16 26 H 0.07 2.58 8.09 -2.39 -0.02 2.56 16 27 H 0.16 3.83 8.08 -2.39 -0.02 3.81 16 28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.08 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 31 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -77.87 286.52 2.86 -75.01 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.10 Total: 8.07 kcal Atomic # 6 Polarization: -76.09 SS G_CDS: 2.89 Total: -73.20 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.28 Total: -54.78 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -2.70 Total: -51.31 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 50.99 SS G_CDS: -0.74 Total: 50.25 kcal Total: -77.87 2.86 -75.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.241 kcal (2) G-P(sol) polarization free energy of solvation -77.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds