Wall clock time and date at job start Mon Mar 30 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00284 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00078 * 359.52112 * 5 4 3 7 7 C 1.50698 * 120.00186 * 180.23547 * 6 5 4 8 8 S 1.81397 * 109.47305 * 270.17399 * 7 6 5 9 9 O 1.42092 * 109.47271 * 296.38506 * 8 7 6 10 10 C 1.81406 * 103.00123 * 179.97438 * 8 7 6 11 11 C 1.50702 * 109.47174 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99464 * 0.02562 * 11 10 8 13 13 C 1.37870 * 120.00093 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99978 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00231 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46983 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46970 * 120.00067 * 15 13 11 18 18 H 1.48491 * 109.47442 * 240.00086 * 15 13 11 19 19 C 1.38216 * 119.99971 * 179.97438 * 2 1 3 20 20 H 1.08995 * 109.47498 * 89.99606 * 1 2 3 21 21 H 1.08999 * 109.46948 * 210.00269 * 1 2 3 22 22 H 1.09009 * 109.46815 * 329.99242 * 1 2 3 23 23 H 1.07999 * 119.99759 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 25 25 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 26 26 H 1.09003 * 109.47096 * 30.17132 * 7 6 5 27 27 H 1.08998 * 109.47316 * 150.17002 * 7 6 5 28 28 H 1.08996 * 109.47058 * 300.00350 * 10 8 7 29 29 H 1.08997 * 109.46983 * 60.00115 * 10 8 7 30 30 H 0.97000 * 120.00436 * 180.02562 * 14 13 11 31 31 H 1.08002 * 119.99715 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0009 7 6 4.3340 -2.5021 -0.0015 8 16 4.6352 -3.0257 -1.7120 9 8 3.3938 -3.2763 -2.3562 10 6 5.5372 -4.5864 -1.5082 11 6 5.8666 -5.1569 -2.8636 12 1 5.5639 -4.6328 -3.7581 13 6 6.5542 -6.3479 -2.9617 14 7 6.9231 -6.9858 -1.8724 15 14 6.9618 -7.0554 -4.6417 16 1 6.4404 -6.1523 -5.6990 17 1 8.4348 -7.1818 -4.7815 18 1 6.3348 -8.3943 -4.7804 19 6 2.1981 -1.1970 0.0005 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5140 23 1 1.6583 2.1326 -0.0004 24 1 4.1204 2.1326 0.0010 25 1 5.3517 -0.0001 -0.0091 26 1 5.2868 -2.3719 0.5117 27 1 3.7453 -3.2618 0.5127 28 1 6.4598 -4.4036 -0.9574 29 1 4.9187 -5.2941 -0.9563 30 1 7.4073 -7.8235 -1.9414 31 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787928.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:23 Heat of formation + Delta-G solvation = -54.945229 kcal Electronic energy + Delta-G solvation = -14028.304648 eV Core-core repulsion = 11592.639290 eV Total energy + Delta-G solvation = -2435.665358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.25281 -36.54615 -35.25189 -34.43519 -32.80517 -30.70583 -28.40256 -27.55655 -25.22514 -23.00480 -21.60038 -18.72995 -18.27822 -17.30090 -16.82646 -16.48761 -15.98569 -15.87995 -15.10369 -14.94150 -14.58674 -14.24609 -14.08486 -13.81793 -13.62534 -13.25201 -13.00745 -12.87770 -12.76521 -12.55306 -12.22508 -11.99496 -11.83206 -11.61837 -10.93584 -10.70952 -9.69788 -9.46442 -8.87757 -8.32159 -6.46292 0.25026 0.50150 1.06649 1.37674 1.39105 1.53274 2.07858 2.35595 2.89497 2.99470 3.12740 3.71824 3.91640 4.09230 4.23847 4.31791 4.49272 4.64924 4.75258 4.77412 4.86902 4.92667 4.96194 5.09977 5.18145 5.31291 5.53027 5.60851 5.68323 5.72345 5.91980 6.17301 6.67671 7.23046 8.80700 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.051619 B = 0.005091 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.309617 B = 5499.106270 C = 5644.740759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.130 4.130 4 C -0.111 4.111 5 C -0.125 4.125 6 C -0.072 4.072 7 C -0.406 4.406 8 S 1.273 4.727 9 O -0.921 6.921 10 C -0.272 4.272 11 C -0.540 4.540 12 H 0.063 0.937 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.965 3.035 16 H -0.262 1.262 17 H -0.262 1.262 18 H -0.282 1.282 19 C -0.148 4.148 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.090 0.910 23 H 0.149 0.851 24 H 0.160 0.840 25 H 0.160 0.840 26 H 0.157 0.843 27 H 0.070 0.930 28 H 0.080 0.920 29 H -0.001 1.001 30 H 0.268 0.732 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 18.080 4.949 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.128 4.128 5 C -0.144 4.144 6 C -0.074 4.074 7 C -0.542 4.542 8 S 1.476 4.524 9 O -0.917 6.917 10 C -0.410 4.410 11 C -0.578 4.578 12 H 0.081 0.919 13 C -0.189 4.189 14 N -0.562 5.562 15 Si 0.789 3.211 16 H -0.186 1.186 17 H -0.186 1.186 18 H -0.208 1.208 19 C -0.168 4.168 20 H 0.089 0.911 21 H 0.077 0.923 22 H 0.109 0.891 23 H 0.167 0.833 24 H 0.178 0.822 25 H 0.178 0.822 26 H 0.174 0.826 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.017 0.983 30 H 0.077 0.923 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.799 18.357 4.172 19.205 hybrid contribution -1.169 -2.907 0.625 3.195 sum -4.967 15.450 4.797 16.923 Atomic orbital electron populations 1.20833 0.90026 1.03448 1.02712 1.20191 0.97319 0.92948 0.99430 1.21405 0.95081 0.97546 1.00826 1.21572 0.94231 0.98869 0.98138 1.21467 1.01869 0.90831 1.00238 1.19297 0.93124 0.94035 1.00911 1.26712 1.07401 0.99846 1.20253 1.69111 0.96518 1.01049 0.85675 1.92894 1.46506 1.85835 1.66454 1.25073 1.04693 1.09719 1.01562 1.20943 1.37320 1.08083 0.91482 0.91861 1.25930 0.94937 0.96792 1.01208 1.70077 1.39092 1.16985 1.30005 0.85388 0.78792 0.78050 0.78890 1.18556 1.18648 1.20838 1.21055 0.94584 0.97888 1.03269 0.91069 0.92279 0.89128 0.83283 0.82193 0.82209 0.82550 0.91103 0.90172 0.98258 0.92314 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 10.01 71.24 0.71 -1.65 16 2 C -0.10 -2.59 5.88 -19.87 -0.12 -2.71 16 3 C -0.13 -2.70 9.70 22.27 0.22 -2.49 16 4 C -0.11 -2.12 10.05 22.27 0.22 -1.89 16 5 C -0.13 -2.84 9.70 22.27 0.22 -2.62 16 6 C -0.07 -2.19 5.14 -19.87 -0.10 -2.30 16 7 C -0.41 -13.08 6.05 71.24 0.43 -12.65 16 8 S 1.27 51.09 13.06 -56.49 -0.74 50.35 16 9 O -0.92 -48.80 18.14 -148.98 -2.70 -51.50 16 10 C -0.27 -13.86 5.68 71.24 0.40 -13.46 16 11 C -0.54 -30.83 9.13 25.60 0.23 -30.60 16 12 H 0.06 3.54 7.71 -2.91 -0.02 3.51 16 13 C 0.01 0.68 5.46 84.65 0.46 1.14 16 14 N -0.92 -55.08 13.29 21.44 0.28 -54.79 16 15 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 C -0.15 -4.85 9.36 22.27 0.21 -4.65 16 20 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 22 H 0.09 1.37 8.09 -2.38 -0.02 1.35 16 23 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 24 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 25 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 26 H 0.16 3.83 8.09 -2.39 -0.02 3.81 16 27 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 28 H 0.08 3.86 8.14 -2.39 -0.02 3.84 16 29 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.09 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -78.51 286.52 2.86 -75.65 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.10 Total: 8.09 kcal Atomic # 6 Polarization: -76.75 SS G_CDS: 2.89 Total: -73.86 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.28 Total: -54.79 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -2.70 Total: -51.50 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.74 Total: 50.35 kcal Total: -78.51 2.86 -75.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787928.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.709 kcal (2) G-P(sol) polarization free energy of solvation -78.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds