Wall clock time and date at job start Mon Mar 30 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 119.99940 * 2 1 4 4 C 1.38216 * 119.99884 * 180.23703 * 3 2 1 5 5 C 1.38256 * 119.99831 * 359.80807 * 4 3 2 6 6 C 1.38213 * 120.00355 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00146 * 179.79164 * 2 1 3 8 8 C 1.50700 * 119.99924 * 359.97438 * 7 2 1 9 9 S 1.81394 * 109.46854 * 269.72632 * 8 7 2 10 10 O 1.42104 * 109.47298 * 63.61143 * 9 8 7 11 11 C 1.81399 * 102.99894 * 179.97438 * 9 8 7 12 12 C 1.50703 * 109.47147 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00275 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99709 * 179.97438 * 12 11 9 15 15 N 1.31508 * 120.00040 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99653 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46942 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00266 * 16 14 12 19 19 H 1.48500 * 109.46999 * 240.00165 * 16 14 12 20 20 H 1.09000 * 109.46554 * 270.20442 * 1 2 3 21 21 H 1.08995 * 109.47353 * 30.20730 * 1 2 3 22 22 H 1.09005 * 109.46947 * 150.20850 * 1 2 3 23 23 H 1.07996 * 120.00210 * 0.06685 * 3 2 1 24 24 H 1.07999 * 120.00004 * 179.83709 * 4 3 2 25 25 H 1.08001 * 119.99828 * 180.02562 * 5 4 3 26 26 H 1.07996 * 119.99978 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.46755 * 149.72556 * 8 7 2 28 28 H 1.08998 * 109.46859 * 29.72322 * 8 7 2 29 29 H 1.09001 * 109.47190 * 299.99732 * 11 9 8 30 30 H 1.09004 * 109.47089 * 59.99865 * 11 9 8 31 31 H 0.97006 * 119.99966 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0050 5 6 4.2717 0.0000 -0.0059 6 6 3.5807 -1.1970 -0.0013 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5021 0.0097 9 16 1.1501 -3.0231 1.7220 10 8 0.3154 -2.0726 2.3695 11 6 0.2473 -4.5840 1.5240 12 6 -0.0757 -5.1532 2.8815 13 1 0.2310 -4.6283 3.7741 14 6 -0.7638 -6.3437 2.9839 15 7 -1.1377 -6.9826 1.8970 16 14 -1.1635 -7.0496 4.6666 17 1 -0.6362 -6.1460 5.7204 18 1 -2.6359 -7.1748 4.8138 19 1 -0.5368 -8.3889 4.8031 20 1 -0.3632 0.0037 1.0277 21 1 -0.3634 0.8881 -0.5170 22 1 -0.3633 -0.8919 -0.5106 23 1 1.6583 2.1327 0.0011 24 1 4.1204 2.1327 -0.0076 25 1 5.3517 0.0000 -0.0093 26 1 4.1207 -2.1322 -0.0017 27 1 2.0315 -3.2625 -0.5057 28 1 0.4899 -2.3724 -0.5000 29 1 -0.6775 -4.4019 0.9766 30 1 0.8636 -5.2925 0.9706 31 1 -1.6222 -7.8200 1.9691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787941.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:26 Heat of formation + Delta-G solvation = -27.956646 kcal Electronic energy + Delta-G solvation = -14294.856276 eV Core-core repulsion = 11860.361230 eV Total energy + Delta-G solvation = -2434.495045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.27487 -34.62919 -33.15626 -33.09899 -31.89531 -28.64210 -27.37132 -26.19868 -23.16450 -21.86444 -20.56667 -16.82455 -16.43146 -16.13248 -15.52643 -15.00732 -14.73973 -14.38974 -13.55863 -13.21719 -13.06781 -12.94526 -12.58133 -12.24761 -12.17603 -11.91170 -11.69363 -11.22814 -10.96065 -10.80471 -10.75876 -10.64918 -10.32469 -9.56750 -9.32098 -8.58501 -8.57172 -8.15661 -7.15200 -6.18827 -4.25201 1.43834 1.55003 2.58487 3.24357 3.32043 3.38228 3.77581 3.98681 4.33954 4.71777 4.95305 5.00005 5.13517 5.18016 5.20718 5.43364 5.51544 5.78293 5.83816 5.86972 6.02354 6.14325 6.30050 6.46570 6.62711 6.64310 6.87705 7.01324 7.11017 7.18773 7.68434 8.00594 8.79359 9.39781 10.93123 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.050538 B = 0.005551 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.904969 B = 5042.477392 C = 5136.950462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.121 4.121 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.116 4.116 7 C -0.049 4.049 8 C -0.425 4.425 9 S 1.204 4.796 10 O -0.855 6.855 11 C -0.257 4.257 12 C -0.514 4.514 13 H 0.065 0.935 14 C 0.067 3.933 15 N -0.887 5.887 16 Si 0.899 3.101 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.280 1.280 20 H 0.086 0.914 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.117 0.883 24 H 0.117 0.883 25 H 0.120 0.880 26 H 0.129 0.871 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.410 10.383 -5.009 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.135 4.135 7 C -0.050 4.050 8 C -0.557 4.557 9 S 1.406 4.594 10 O -0.851 6.851 11 C -0.398 4.398 12 C -0.553 4.553 13 H 0.083 0.917 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.726 3.274 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.205 1.205 20 H 0.105 0.895 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.135 0.865 24 H 0.135 0.865 25 H 0.138 0.862 26 H 0.147 0.853 27 H 0.136 0.864 28 H 0.109 0.891 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.571 10.720 -4.267 15.648 hybrid contribution -2.305 -0.305 -0.447 2.368 sum 8.266 10.415 -4.714 14.108 Atomic orbital electron populations 1.20935 0.91470 1.01834 1.03658 1.19811 0.96176 0.92739 0.99025 1.20952 0.94304 0.97162 1.01476 1.21042 0.94160 0.97942 1.01591 1.21055 0.99584 0.92481 1.01334 1.21057 0.93181 0.98487 1.00754 1.19126 0.93436 0.92948 0.99537 1.26989 1.04687 1.00238 1.23790 1.70071 1.16646 0.88578 0.84149 1.93008 1.72508 1.57401 1.62137 1.24944 1.04699 1.06920 1.03221 1.20500 1.37957 1.06675 0.90154 0.91707 1.24986 0.94956 0.96565 0.97181 1.69975 1.38200 1.16456 1.27884 0.86404 0.78293 0.78999 0.83670 1.19252 1.20818 1.20539 0.89547 0.92201 0.91794 0.86468 0.86490 0.86179 0.85323 0.86428 0.89087 0.94345 0.91043 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.40 36.01 0.34 -1.63 16 2 C -0.08 -1.21 5.88 -104.62 -0.62 -1.83 16 3 C -0.12 -1.66 9.70 -39.58 -0.38 -2.04 16 4 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 5 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 6 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 7 C -0.05 -0.77 5.14 -104.62 -0.54 -1.31 16 8 C -0.43 -6.86 5.65 36.01 0.20 -6.65 16 9 S 1.20 23.44 13.06 -107.50 -1.40 22.04 16 10 O -0.86 -21.08 17.31 -35.23 -0.61 -21.69 16 11 C -0.26 -6.29 5.68 36.01 0.20 -6.08 16 12 C -0.51 -14.24 9.13 -34.44 -0.31 -14.55 16 13 H 0.06 1.77 7.71 -52.49 -0.40 1.36 16 14 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 15 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 16 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H 0.09 1.58 7.51 -51.93 -0.39 1.19 16 21 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 22 H 0.06 1.05 5.94 -51.93 -0.31 0.74 16 23 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 24 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 25 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 27 H 0.12 1.57 8.09 -51.92 -0.42 1.15 16 28 H 0.09 1.56 5.94 -51.93 -0.31 1.25 16 29 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.07 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 280.45 15.07 4.23 4.23 Total: -1.00 -34.10 280.45 -8.38 -42.48 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -3.92 Total: -0.16 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: -2.38 Total: -38.03 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.74 Total: -25.14 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.61 Total: -21.69 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 23.44 SS G_CDS: -1.40 Total: 22.04 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.10 -8.38 -42.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787941.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.521 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds