Wall clock time and date at job start Mon Mar 30 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 119.99940 * 2 1 4 4 C 1.38216 * 119.99884 * 180.23703 * 3 2 1 5 5 C 1.38256 * 119.99831 * 359.80807 * 4 3 2 6 6 C 1.38213 * 120.00355 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00146 * 179.79164 * 2 1 3 8 8 C 1.50700 * 119.99924 * 359.97438 * 7 2 1 9 9 S 1.81394 * 109.46854 * 269.72632 * 8 7 2 10 10 O 1.42104 * 109.47298 * 63.61143 * 9 8 7 11 11 C 1.81399 * 102.99894 * 179.97438 * 9 8 7 12 12 C 1.50703 * 109.47147 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00275 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99709 * 179.97438 * 12 11 9 15 15 N 1.31508 * 120.00040 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99653 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46942 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00266 * 16 14 12 19 19 H 1.48500 * 109.46999 * 240.00165 * 16 14 12 20 20 H 1.09000 * 109.46554 * 270.20442 * 1 2 3 21 21 H 1.08995 * 109.47353 * 30.20730 * 1 2 3 22 22 H 1.09005 * 109.46947 * 150.20850 * 1 2 3 23 23 H 1.07996 * 120.00210 * 0.06685 * 3 2 1 24 24 H 1.07999 * 120.00004 * 179.83709 * 4 3 2 25 25 H 1.08001 * 119.99828 * 180.02562 * 5 4 3 26 26 H 1.07996 * 119.99978 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.46755 * 149.72556 * 8 7 2 28 28 H 1.08998 * 109.46859 * 29.72322 * 8 7 2 29 29 H 1.09001 * 109.47190 * 299.99732 * 11 9 8 30 30 H 1.09004 * 109.47089 * 59.99865 * 11 9 8 31 31 H 0.97006 * 119.99966 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0050 5 6 4.2717 0.0000 -0.0059 6 6 3.5807 -1.1970 -0.0013 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5021 0.0097 9 16 1.1501 -3.0231 1.7220 10 8 0.3154 -2.0726 2.3695 11 6 0.2473 -4.5840 1.5240 12 6 -0.0757 -5.1532 2.8815 13 1 0.2310 -4.6283 3.7741 14 6 -0.7638 -6.3437 2.9839 15 7 -1.1377 -6.9826 1.8970 16 14 -1.1635 -7.0496 4.6666 17 1 -0.6362 -6.1460 5.7204 18 1 -2.6359 -7.1748 4.8138 19 1 -0.5368 -8.3889 4.8031 20 1 -0.3632 0.0037 1.0277 21 1 -0.3634 0.8881 -0.5170 22 1 -0.3633 -0.8919 -0.5106 23 1 1.6583 2.1327 0.0011 24 1 4.1204 2.1327 -0.0076 25 1 5.3517 0.0000 -0.0093 26 1 4.1207 -2.1322 -0.0017 27 1 2.0315 -3.2625 -0.5057 28 1 0.4899 -2.3724 -0.5000 29 1 -0.6775 -4.4019 0.9766 30 1 0.8636 -5.2925 0.9706 31 1 -1.6222 -7.8200 1.9691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787941.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:25 Heat of formation + Delta-G solvation = -50.234098 kcal Electronic energy + Delta-G solvation = -14295.822298 eV Core-core repulsion = 11860.361230 eV Total energy + Delta-G solvation = -2435.461068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.31766 -36.46684 -35.23813 -34.22458 -32.99901 -30.68528 -28.55470 -27.37645 -25.19327 -22.92475 -21.65534 -18.72581 -18.21557 -17.23188 -16.79191 -16.68840 -16.06069 -15.84392 -15.14385 -14.84867 -14.52139 -14.17326 -13.94198 -13.81136 -13.60291 -13.22069 -13.09249 -13.01909 -12.74354 -12.52935 -12.20481 -11.85713 -11.77371 -11.59914 -10.92445 -10.70082 -9.62582 -9.47188 -8.81379 -8.31258 -6.45016 0.28363 0.53555 1.10578 1.37730 1.39229 1.53279 2.11825 2.36022 2.91887 3.01521 3.17616 3.75379 3.93421 4.10359 4.13108 4.37146 4.43709 4.59204 4.77684 4.81730 4.84642 4.91500 4.95249 5.11707 5.23604 5.29793 5.54114 5.62312 5.67232 5.78413 5.93448 6.19341 6.69201 7.24131 8.81545 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.050538 B = 0.005551 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.904969 B = 5042.477392 C = 5136.950462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.132 4.132 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.080 4.080 8 C -0.410 4.410 9 S 1.270 4.730 10 O -0.910 6.910 11 C -0.272 4.272 12 C -0.537 4.537 13 H 0.063 0.937 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.964 3.036 17 H -0.262 1.262 18 H -0.283 1.283 19 H -0.263 1.263 20 H 0.054 0.946 21 H 0.083 0.917 22 H 0.050 0.950 23 H 0.132 0.868 24 H 0.149 0.851 25 H 0.157 0.843 26 H 0.158 0.842 27 H 0.152 0.848 28 H 0.077 0.923 29 H -0.001 1.001 30 H 0.076 0.924 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.968 11.270 -5.040 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.107 4.107 3 C -0.150 4.150 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.135 4.135 7 C -0.081 4.081 8 C -0.546 4.546 9 S 1.473 4.527 10 O -0.906 6.906 11 C -0.411 4.411 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.189 4.189 15 N -0.562 5.562 16 Si 0.788 3.212 17 H -0.186 1.186 18 H -0.209 1.209 19 H -0.187 1.187 20 H 0.073 0.927 21 H 0.101 0.899 22 H 0.069 0.931 23 H 0.150 0.850 24 H 0.167 0.833 25 H 0.174 0.826 26 H 0.176 0.824 27 H 0.170 0.830 28 H 0.096 0.904 29 H 0.017 0.983 30 H 0.095 0.905 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.114 11.575 -4.262 18.004 hybrid contribution -2.980 -0.411 -0.589 3.065 sum 10.134 11.164 -4.851 15.839 Atomic orbital electron populations 1.20866 0.92688 1.02372 1.01745 1.19982 0.95775 0.94123 1.00822 1.21223 0.95482 0.96928 1.01409 1.21500 0.93539 0.99696 0.99486 1.21536 1.01474 0.91697 0.99408 1.21457 0.92064 1.00609 0.99369 1.19202 0.94772 0.91951 1.02195 1.26779 1.05087 1.02306 1.20419 1.69238 1.12928 0.84921 0.85624 1.92903 1.72965 1.58709 1.66041 1.25087 1.03694 1.10885 1.01431 1.20938 1.38075 1.07077 0.91500 0.91886 1.25925 0.94778 0.97047 1.01139 1.70078 1.39024 1.17022 1.30081 0.85405 0.77914 0.78902 0.78997 1.18555 1.20859 1.18740 0.92693 0.89862 0.93131 0.84998 0.83307 0.82560 0.82446 0.83039 0.90447 0.98272 0.90544 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 9.40 71.24 0.67 -3.30 16 2 C -0.11 -3.28 5.88 -19.86 -0.12 -3.40 16 3 C -0.13 -3.34 9.70 22.27 0.22 -3.13 16 4 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 5 C -0.12 -2.36 10.05 22.27 0.22 -2.13 16 6 C -0.12 -2.62 9.70 22.27 0.22 -2.40 16 7 C -0.08 -2.37 5.14 -19.87 -0.10 -2.47 16 8 C -0.41 -13.01 5.65 71.24 0.40 -12.61 16 9 S 1.27 50.08 13.06 -56.49 -0.74 49.34 16 10 O -0.91 -46.34 17.31 -148.98 -2.58 -48.92 16 11 C -0.27 -13.81 5.68 71.24 0.40 -13.41 16 12 C -0.54 -30.53 9.13 25.60 0.23 -30.29 16 13 H 0.06 3.50 7.71 -2.91 -0.02 3.48 16 14 C 0.01 0.66 5.46 84.66 0.46 1.12 16 15 N -0.92 -55.05 13.29 21.45 0.28 -54.77 16 16 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H 0.05 2.13 7.51 -2.39 -0.02 2.11 16 21 H 0.08 2.23 8.09 -2.39 -0.02 2.21 16 22 H 0.05 1.74 5.94 -2.38 -0.01 1.73 16 23 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 24 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 25 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 26 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 27 H 0.15 3.73 8.09 -2.39 -0.02 3.71 16 28 H 0.08 2.71 5.94 -2.39 -0.01 2.70 16 29 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 31 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -76.25 280.45 2.94 -73.31 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.11 Total: 9.33 kcal Atomic # 6 Polarization: -77.14 SS G_CDS: 2.83 Total: -74.30 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.28 Total: -54.77 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -2.58 Total: -48.92 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 50.08 SS G_CDS: -0.74 Total: 49.34 kcal Total: -76.25 2.94 -73.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787941.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.079 kcal (2) G-P(sol) polarization free energy of solvation -76.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds