Wall clock time and date at job start Mon Mar 30 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00254 * 2 1 4 4 C 1.38212 * 120.00319 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.26336 * 4 3 2 6 6 S 1.76200 * 119.99586 * 179.72257 * 5 4 3 7 7 O 1.42095 * 102.99983 * 336.13993 * 6 5 4 8 8 C 1.81392 * 103.00249 * 89.99332 * 6 5 4 9 9 C 1.50698 * 109.47395 * 179.97438 * 8 6 5 10 10 H 1.08007 * 119.99831 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00595 * 180.02562 * 9 8 6 12 12 N 1.31511 * 119.99412 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00128 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47554 * 59.99540 * 13 11 9 15 15 H 1.48498 * 109.46965 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46825 * 299.99483 * 13 11 9 17 17 C 1.38208 * 120.00088 * 359.47803 * 5 4 3 18 18 C 1.38216 * 120.00020 * 180.02562 * 2 1 3 19 19 C 1.50706 * 119.99769 * 359.97438 * 18 2 1 20 20 H 1.08998 * 109.46845 * 89.99859 * 1 2 3 21 21 H 1.08996 * 109.47280 * 210.00020 * 1 2 3 22 22 H 1.08999 * 109.46887 * 329.99914 * 1 2 3 23 23 H 1.07999 * 119.99740 * 0.02562 * 3 2 1 24 24 H 1.08002 * 119.99812 * 179.97438 * 4 3 2 25 25 H 1.08999 * 109.47645 * 299.99853 * 8 6 5 26 26 H 1.09007 * 109.46871 * 60.00082 * 8 6 5 27 27 H 0.97007 * 119.99922 * 179.97438 * 12 11 9 28 28 H 1.07999 * 119.99941 * 180.23499 * 17 5 4 29 29 H 1.09004 * 109.46442 * 90.00601 * 19 18 2 30 30 H 1.09000 * 109.46849 * 210.00007 * 19 18 2 31 31 H 1.08993 * 109.47102 * 330.00304 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0066 6 16 6.0337 0.0000 -0.0146 7 8 6.3507 1.2675 -0.5731 8 6 6.4499 -0.0040 1.7509 9 6 7.9480 -0.0050 1.9139 10 1 8.5860 -0.0029 1.0424 11 6 8.5044 -0.0085 3.1754 12 7 7.7275 -0.0105 4.2366 13 14 10.3614 -0.0090 3.3773 14 1 10.9292 1.2052 2.7382 15 1 10.7021 -0.0137 4.8227 16 1 10.9291 -1.2197 2.7316 17 6 3.5807 -1.1970 -0.0012 18 6 2.1981 -1.1970 -0.0005 19 6 1.4445 -2.5021 -0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6583 2.1326 0.0004 24 1 4.1204 2.1327 -0.0010 25 1 6.0332 0.8848 2.2245 26 1 6.0331 -0.8952 2.2204 27 1 8.1188 -0.0134 5.1242 28 1 4.1206 -2.1323 -0.0021 29 1 1.2626 -2.8165 -1.0283 30 1 2.0338 -3.2618 0.5129 31 1 0.4923 -2.3718 0.5136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788228.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:30 Heat of formation + Delta-G solvation = -31.375828 kcal Electronic energy + Delta-G solvation = -14234.029577 eV Core-core repulsion = 11799.386265 eV Total energy + Delta-G solvation = -2434.643312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.20276 -34.69612 -33.15437 -33.10278 -31.95516 -28.56338 -27.50510 -26.27359 -23.13204 -21.95734 -20.74703 -17.26683 -16.40723 -15.77582 -15.55206 -14.85036 -14.57417 -14.24733 -13.51736 -13.35339 -13.00994 -12.82345 -12.69953 -12.35188 -12.22915 -11.91107 -11.66192 -11.34498 -11.07769 -10.94627 -10.77816 -10.60499 -10.28681 -9.59391 -9.03178 -8.59972 -8.54150 -8.39144 -7.26918 -6.15625 -4.23190 1.34391 1.65472 2.79018 3.28472 3.32376 3.36642 3.71477 4.09096 4.35949 4.83608 4.90447 5.00171 5.13768 5.20426 5.25474 5.47403 5.51536 5.66906 5.67360 5.82567 5.90142 5.93344 6.26844 6.33956 6.59862 6.71906 6.78346 7.10004 7.19854 7.26274 7.68181 8.02922 8.80968 9.41491 10.96055 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.039479 B = 0.005862 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.060428 B = 4775.711611 C = 4974.705131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.136 4.136 4 C -0.059 4.059 5 C -0.441 4.441 6 S 1.274 4.726 7 O -0.875 6.875 8 C -0.255 4.255 9 C -0.518 4.518 10 H 0.064 0.936 11 C 0.069 3.931 12 N -0.886 5.886 13 Si 0.900 3.100 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.046 4.046 18 C -0.110 4.110 19 C -0.113 4.113 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.117 0.883 24 H 0.123 0.877 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 -6.293 -7.729 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.155 4.155 4 C -0.078 4.078 5 C -0.535 4.535 6 S 1.475 4.525 7 O -0.871 6.871 8 C -0.395 4.395 9 C -0.557 4.557 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.726 3.274 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.065 4.065 18 C -0.111 4.111 19 C -0.170 4.170 20 H 0.087 0.913 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.135 0.865 24 H 0.141 0.859 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.585 -6.266 -8.357 15.599 hybrid contribution -0.048 1.957 1.519 2.478 sum -11.633 -4.309 -6.838 14.165 Atomic orbital electron populations 1.20868 0.91629 1.02720 1.02104 1.19800 0.95604 0.92925 0.98755 1.21045 0.94414 0.97241 1.02821 1.21115 0.94048 0.98034 0.94600 1.28297 1.21346 0.96388 1.07516 1.68779 0.79748 1.10007 0.93965 1.92985 1.77447 1.44887 1.71764 1.24961 1.02671 1.03043 1.08854 1.20415 0.88815 1.53480 0.92980 0.91834 1.24982 0.98655 0.94310 0.95634 1.69971 1.35363 1.48890 0.98110 0.86523 0.84568 0.79077 0.77187 1.19952 1.21051 1.19565 1.20719 0.93006 0.96960 0.95785 1.19814 0.94095 0.94673 1.02513 1.20820 0.99937 0.94181 1.02034 0.91277 0.91127 0.91810 0.86510 0.85887 0.94130 0.91170 0.92579 0.84889 0.91434 0.91354 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.60 36.01 0.35 -0.86 16 2 C -0.07 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.14 -2.18 9.70 -39.58 -0.38 -2.57 16 4 C -0.06 -1.13 9.44 -39.58 -0.37 -1.50 16 5 C -0.44 -8.15 5.61 -39.58 -0.22 -8.37 16 6 S 1.27 25.76 13.47 -107.50 -1.45 24.31 16 7 O -0.88 -22.45 16.90 -35.23 -0.60 -23.05 16 8 C -0.25 -6.45 5.64 36.00 0.20 -6.25 16 9 C -0.52 -14.39 9.13 -34.44 -0.31 -14.70 16 10 H 0.06 1.69 7.71 -52.48 -0.40 1.28 16 11 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 12 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 13 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 17 C -0.05 -0.70 9.41 -39.59 -0.37 -1.07 16 18 C -0.11 -1.53 5.88 -104.62 -0.62 -2.14 16 19 C -0.11 -1.14 9.60 36.01 0.35 -0.79 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.07 0.63 5.95 -51.93 -0.31 0.32 16 22 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 23 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 24 H 0.12 2.55 7.46 -52.49 -0.39 2.15 16 25 H 0.04 1.15 8.14 -51.92 -0.42 0.73 16 26 H 0.07 1.73 8.14 -51.92 -0.42 1.30 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 LS Contribution 280.10 15.07 4.22 4.22 Total: -1.00 -35.45 280.10 -8.13 -43.58 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -3.92 Total: -1.83 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: -2.10 Total: -38.03 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.74 Total: -25.46 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.60 Total: -23.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 25.76 SS G_CDS: -1.45 Total: 24.31 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -35.45 -8.13 -43.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788228.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.209 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds