Wall clock time and date at job start Mon Mar 30 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00254 * 2 1 4 4 C 1.38212 * 120.00319 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.26336 * 4 3 2 6 6 S 1.76200 * 119.99586 * 179.72257 * 5 4 3 7 7 O 1.42095 * 102.99983 * 336.13993 * 6 5 4 8 8 C 1.81392 * 103.00249 * 89.99332 * 6 5 4 9 9 C 1.50698 * 109.47395 * 179.97438 * 8 6 5 10 10 H 1.08007 * 119.99831 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00595 * 180.02562 * 9 8 6 12 12 N 1.31511 * 119.99412 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00128 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47554 * 59.99540 * 13 11 9 15 15 H 1.48498 * 109.46965 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46825 * 299.99483 * 13 11 9 17 17 C 1.38208 * 120.00088 * 359.47803 * 5 4 3 18 18 C 1.38216 * 120.00020 * 180.02562 * 2 1 3 19 19 C 1.50706 * 119.99769 * 359.97438 * 18 2 1 20 20 H 1.08998 * 109.46845 * 89.99859 * 1 2 3 21 21 H 1.08996 * 109.47280 * 210.00020 * 1 2 3 22 22 H 1.08999 * 109.46887 * 329.99914 * 1 2 3 23 23 H 1.07999 * 119.99740 * 0.02562 * 3 2 1 24 24 H 1.08002 * 119.99812 * 179.97438 * 4 3 2 25 25 H 1.08999 * 109.47645 * 299.99853 * 8 6 5 26 26 H 1.09007 * 109.46871 * 60.00082 * 8 6 5 27 27 H 0.97007 * 119.99922 * 179.97438 * 12 11 9 28 28 H 1.07999 * 119.99941 * 180.23499 * 17 5 4 29 29 H 1.09004 * 109.46442 * 90.00601 * 19 18 2 30 30 H 1.09000 * 109.46849 * 210.00007 * 19 18 2 31 31 H 1.08993 * 109.47102 * 330.00304 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0066 6 16 6.0337 0.0000 -0.0146 7 8 6.3507 1.2675 -0.5731 8 6 6.4499 -0.0040 1.7509 9 6 7.9480 -0.0050 1.9139 10 1 8.5860 -0.0029 1.0424 11 6 8.5044 -0.0085 3.1754 12 7 7.7275 -0.0105 4.2366 13 14 10.3614 -0.0090 3.3773 14 1 10.9292 1.2052 2.7382 15 1 10.7021 -0.0137 4.8227 16 1 10.9291 -1.2197 2.7316 17 6 3.5807 -1.1970 -0.0012 18 6 2.1981 -1.1970 -0.0005 19 6 1.4445 -2.5021 -0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6583 2.1326 0.0004 24 1 4.1204 2.1327 -0.0010 25 1 6.0332 0.8848 2.2245 26 1 6.0331 -0.8952 2.2204 27 1 8.1188 -0.0134 5.1242 28 1 4.1206 -2.1323 -0.0021 29 1 1.2626 -2.8165 -1.0283 30 1 2.0338 -3.2618 0.5129 31 1 0.4923 -2.3718 0.5136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788228.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:30 Heat of formation + Delta-G solvation = -55.335069 kcal Electronic energy + Delta-G solvation = -14235.068528 eV Core-core repulsion = 11799.386265 eV Total energy + Delta-G solvation = -2435.682263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39798 -36.62970 -35.23794 -34.31264 -33.06585 -30.66654 -28.53710 -27.33383 -25.22300 -23.13412 -22.01089 -18.93188 -18.40786 -17.31737 -16.77405 -16.68910 -15.94590 -15.44566 -15.01643 -14.78866 -14.65345 -14.20631 -14.03555 -13.54916 -13.50140 -13.28709 -12.96503 -12.78587 -12.74395 -12.54775 -12.35002 -12.09092 -11.87184 -11.66126 -10.81572 -10.68291 -9.88963 -9.61975 -9.08139 -8.29890 -6.45776 0.00369 0.40173 1.18537 1.40135 1.44028 1.52100 2.12029 2.37462 2.69104 3.01216 3.18112 3.83634 3.92236 4.03477 4.32098 4.40634 4.57252 4.74912 4.77441 4.90104 4.95366 5.00413 5.03648 5.10907 5.21784 5.31201 5.39311 5.43138 5.53164 5.65066 5.91297 6.07631 6.68476 7.23893 8.82742 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.039479 B = 0.005862 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.060428 B = 4775.711611 C = 4974.705131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.066 4.066 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.470 4.470 6 S 1.362 4.638 7 O -0.933 6.933 8 C -0.270 4.270 9 C -0.541 4.541 10 H 0.071 0.929 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.968 3.032 14 H -0.276 1.276 15 H -0.279 1.279 16 H -0.246 1.246 17 C -0.046 4.046 18 C -0.110 4.110 19 C -0.112 4.112 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.070 0.930 23 H 0.134 0.866 24 H 0.089 0.911 25 H -0.009 1.009 26 H 0.070 0.930 27 H 0.267 0.733 28 H 0.169 0.831 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.621 -8.544 -8.557 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C -0.165 4.165 4 C -0.114 4.114 5 C -0.567 4.567 6 S 1.564 4.436 7 O -0.929 6.929 8 C -0.408 4.408 9 C -0.580 4.580 10 H 0.089 0.911 11 C -0.190 4.190 12 N -0.564 5.564 13 Si 0.791 3.209 14 H -0.202 1.202 15 H -0.204 1.204 16 H -0.170 1.170 17 C -0.065 4.065 18 C -0.111 4.111 19 C -0.168 4.168 20 H 0.107 0.893 21 H 0.109 0.891 22 H 0.089 0.911 23 H 0.152 0.848 24 H 0.107 0.893 25 H 0.010 0.990 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.186 0.814 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.031 -8.523 -9.177 18.074 hybrid contribution 0.151 2.638 1.719 3.152 sum -12.880 -5.885 -7.458 16.005 Atomic orbital electron populations 1.20977 0.88295 1.04159 1.03723 1.20359 0.98021 0.92120 0.96114 1.21279 0.93130 0.99315 1.02749 1.21065 0.95816 0.97049 0.97485 1.27879 1.19613 0.97931 1.11285 1.67888 0.80390 1.06965 0.88381 1.92847 1.80352 1.47674 1.72032 1.25113 1.01751 1.00573 1.13369 1.20917 0.90320 1.53159 0.93580 0.91107 1.26001 1.04028 0.93677 0.95295 1.70101 1.37658 1.49996 0.98668 0.85455 0.78205 0.79767 0.77485 1.20172 1.20422 1.16988 1.21201 0.94249 0.96825 0.94213 1.20379 0.93735 0.96648 1.00303 1.20936 1.00236 0.91862 1.03792 0.89329 0.89051 0.91118 0.84812 0.89272 0.99040 0.91145 0.92385 0.81388 0.89337 0.90187 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.60 71.24 0.68 -1.21 16 2 C -0.07 -1.69 5.88 -19.87 -0.12 -1.81 16 3 C -0.15 -4.62 9.70 22.27 0.22 -4.41 16 4 C -0.09 -3.80 9.44 22.27 0.21 -3.59 16 5 C -0.47 -17.65 5.61 22.27 0.12 -17.52 16 6 S 1.36 56.96 13.47 -56.49 -0.76 56.20 16 7 O -0.93 -50.18 16.90 -148.98 -2.52 -52.69 16 8 C -0.27 -14.36 5.64 71.24 0.40 -13.96 16 9 C -0.54 -30.97 9.13 25.60 0.23 -30.73 16 10 H 0.07 3.83 7.71 -2.91 -0.02 3.81 16 11 C 0.01 0.60 5.46 84.66 0.46 1.06 16 12 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 13 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 17 C -0.05 -1.32 9.41 22.27 0.21 -1.11 16 18 C -0.11 -2.69 5.88 -19.86 -0.12 -2.81 16 19 C -0.11 -1.69 9.60 71.24 0.68 -1.01 16 20 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.09 1.16 5.95 -2.39 -0.01 1.14 16 22 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 23 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 24 H 0.09 4.05 7.46 -2.91 -0.02 4.03 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.07 3.62 8.14 -2.39 -0.02 3.60 16 27 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 28 H 0.17 3.47 8.06 -2.91 -0.02 3.44 16 29 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 31 H 0.08 1.02 5.95 -2.39 -0.01 1.00 16 Total: -1.00 -80.90 280.10 3.14 -77.76 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.11 Total: 6.00 kcal Atomic # 6 Polarization: -80.08 SS G_CDS: 2.99 Total: -77.08 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.28 Total: -56.08 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -2.52 Total: -52.69 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 56.96 SS G_CDS: -0.76 Total: 56.20 kcal Total: -80.90 3.14 -77.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788228.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.427 kcal (2) G-P(sol) polarization free energy of solvation -80.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds