Wall clock time and date at job start Mon Mar 30 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 S 1.76204 * 120.00078 * 180.23442 * 5 4 3 7 7 O 1.42104 * 102.99798 * 341.32436 * 6 5 4 8 8 C 1.81398 * 102.99868 * 95.17170 * 6 5 4 9 9 C 1.50697 * 109.47473 * 179.97438 * 8 6 5 10 10 H 1.08003 * 119.99655 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00542 * 179.97438 * 9 8 6 12 12 N 1.31513 * 119.99702 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00372 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47043 * 0.02562 * 13 11 9 15 15 H 1.48492 * 109.47079 * 120.00138 * 13 11 9 16 16 H 1.48496 * 109.47272 * 240.00605 * 13 11 9 17 17 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 18 18 C 1.50706 * 120.00280 * 179.82644 * 17 5 4 19 19 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 21 21 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 22 22 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 23 23 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 24 24 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 25 25 H 1.08995 * 109.47582 * 300.00641 * 8 6 5 26 26 H 1.09007 * 109.47038 * 60.00361 * 8 6 5 27 27 H 0.97003 * 119.99872 * 179.97438 * 12 11 9 28 28 H 1.08990 * 109.46925 * 270.02313 * 18 17 5 29 29 H 1.09003 * 109.46716 * 30.02175 * 18 17 5 30 30 H 1.08993 * 109.46977 * 150.01843 * 18 17 5 31 31 H 1.07996 * 120.00479 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 16 6.0337 -0.0003 -0.0014 7 8 6.3533 1.3096 -0.4502 8 6 6.4423 -0.1525 1.7594 9 6 7.9398 -0.1679 1.9282 10 1 8.5815 -0.0931 1.0627 11 6 8.4906 -0.2763 3.1875 12 7 7.7092 -0.3669 4.2414 13 14 10.3467 -0.2947 3.3967 14 1 10.9960 -0.1797 2.0661 15 1 10.7601 0.8488 4.2491 16 1 10.7597 -1.5672 4.0411 17 6 3.5806 -1.1971 0.0006 18 6 4.3340 -2.5023 0.0017 19 6 2.1980 -1.1970 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8898 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6584 2.1326 -0.0005 24 1 4.1205 2.1325 -0.0099 25 1 6.0236 0.6937 2.3041 26 1 6.0235 -1.0797 2.1508 27 1 8.0967 -0.4436 5.1273 28 1 4.5157 -2.8177 -1.0256 29 1 5.2865 -2.3715 0.5155 30 1 3.7449 -3.2614 0.5162 31 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788256.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:35 Heat of formation + Delta-G solvation = -33.433817 kcal Electronic energy + Delta-G solvation = -14404.154659 eV Core-core repulsion = 11969.422106 eV Total energy + Delta-G solvation = -2434.732553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.09140 -34.73244 -33.39780 -33.10380 -31.66382 -28.59302 -27.22787 -26.47859 -23.15689 -21.93717 -20.59341 -17.44929 -16.43750 -15.72435 -15.42111 -14.78466 -14.51187 -13.98955 -13.50868 -13.39385 -13.07699 -12.92550 -12.74688 -12.26639 -12.20360 -11.80324 -11.46150 -11.33982 -11.11612 -10.94423 -10.79952 -10.62702 -10.29794 -9.56565 -9.03564 -8.61789 -8.54417 -8.40423 -7.24482 -6.16775 -4.24274 1.34040 1.67099 2.79520 3.25030 3.32880 3.38392 3.72013 4.08773 4.35135 4.81787 4.92246 5.01000 5.19437 5.20998 5.40969 5.48956 5.54478 5.66475 5.81430 5.86914 5.98143 6.11520 6.23596 6.45875 6.62013 6.74745 6.78782 7.08923 7.19381 7.27666 7.67932 8.01738 8.80301 9.40633 10.94919 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.006286 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.753022 B = 4453.183209 C = 4563.891958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.050 4.050 5 C -0.449 4.449 6 S 1.273 4.727 7 O -0.877 6.877 8 C -0.256 4.256 9 C -0.516 4.516 10 H 0.065 0.935 11 C 0.068 3.932 12 N -0.885 5.885 13 Si 0.899 3.101 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.280 1.280 17 C -0.011 4.011 18 C -0.134 4.134 19 C -0.142 4.142 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.116 0.884 24 H 0.125 0.875 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.264 0.736 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 -5.716 -8.202 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.067 4.067 3 C -0.166 4.166 4 C -0.069 4.069 5 C -0.543 4.543 6 S 1.474 4.526 7 O -0.873 6.873 8 C -0.396 4.396 9 C -0.556 4.556 10 H 0.083 0.917 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.726 3.274 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.205 1.205 17 C -0.012 4.012 18 C -0.191 4.191 19 C -0.161 4.161 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.134 0.866 24 H 0.143 0.857 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.269 -5.632 -8.830 14.668 hybrid contribution -0.180 1.816 1.692 2.489 sum -10.449 -3.816 -7.138 13.217 Atomic orbital electron populations 1.20802 0.91507 1.02634 1.02084 1.19952 0.95671 0.93419 0.97642 1.21032 0.94379 0.97297 1.03850 1.21107 0.94035 0.98005 0.93768 1.28111 1.21200 0.95969 1.09014 1.68833 0.79959 1.07470 0.96344 1.92973 1.77386 1.41118 1.75837 1.24974 1.02734 1.03080 1.08860 1.20490 0.88782 1.52760 0.93525 0.91723 1.24985 0.98645 0.94339 0.95627 1.69990 1.35147 1.48652 0.98484 0.86411 0.84569 0.77808 0.78612 1.19212 1.20826 1.20542 1.19560 0.93307 0.94167 0.94144 1.21060 1.01140 0.93631 1.03220 1.20941 0.93837 0.97228 1.04131 0.91266 0.91558 0.91708 0.86553 0.85704 0.94090 0.91125 0.92677 0.89972 0.89773 0.90951 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.07 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.15 -2.36 9.70 -39.58 -0.38 -2.74 16 4 C -0.05 -0.97 9.45 -39.58 -0.37 -1.34 16 5 C -0.45 -8.43 5.63 -39.58 -0.22 -8.66 16 6 S 1.27 26.13 11.72 -107.50 -1.26 24.87 16 7 O -0.88 -22.73 16.78 -35.23 -0.59 -23.32 16 8 C -0.26 -6.49 5.53 36.00 0.20 -6.29 16 9 C -0.52 -14.30 9.13 -34.44 -0.31 -14.62 16 10 H 0.06 1.72 7.71 -52.48 -0.40 1.32 16 11 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 12 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 13 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.01 -0.17 5.88 -104.62 -0.62 -0.78 16 18 C -0.13 -1.62 9.56 36.01 0.34 -1.28 16 19 C -0.14 -2.02 9.36 -39.58 -0.37 -2.39 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 22 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 23 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 24 H 0.13 2.59 7.34 -52.49 -0.39 2.21 16 25 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.72 7.51 -51.92 -0.39 1.33 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.08 6.02 -51.93 -0.31 0.77 16 30 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 279.92 15.07 4.22 4.22 Total: -1.00 -35.34 279.92 -8.01 -43.35 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.00 Total: -1.32 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: -2.09 Total: -38.64 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.74 Total: -25.32 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.59 Total: -23.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 26.13 SS G_CDS: -1.26 Total: 24.87 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -35.34 -8.01 -43.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788256.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.915 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds