Wall clock time and date at job start Mon Mar 30 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 S 1.76204 * 120.00078 * 180.23442 * 5 4 3 7 7 O 1.42104 * 102.99798 * 341.32436 * 6 5 4 8 8 C 1.81398 * 102.99868 * 95.17170 * 6 5 4 9 9 C 1.50697 * 109.47473 * 179.97438 * 8 6 5 10 10 H 1.08003 * 119.99655 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00542 * 179.97438 * 9 8 6 12 12 N 1.31513 * 119.99702 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00372 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47043 * 0.02562 * 13 11 9 15 15 H 1.48492 * 109.47079 * 120.00138 * 13 11 9 16 16 H 1.48496 * 109.47272 * 240.00605 * 13 11 9 17 17 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 18 18 C 1.50706 * 120.00280 * 179.82644 * 17 5 4 19 19 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 21 21 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 22 22 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 23 23 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 24 24 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 25 25 H 1.08995 * 109.47582 * 300.00641 * 8 6 5 26 26 H 1.09007 * 109.47038 * 60.00361 * 8 6 5 27 27 H 0.97003 * 119.99872 * 179.97438 * 12 11 9 28 28 H 1.08990 * 109.46925 * 270.02313 * 18 17 5 29 29 H 1.09003 * 109.46716 * 30.02175 * 18 17 5 30 30 H 1.08993 * 109.46977 * 150.01843 * 18 17 5 31 31 H 1.07996 * 120.00479 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 16 6.0337 -0.0003 -0.0014 7 8 6.3533 1.3096 -0.4502 8 6 6.4423 -0.1525 1.7594 9 6 7.9398 -0.1679 1.9282 10 1 8.5815 -0.0931 1.0627 11 6 8.4906 -0.2763 3.1875 12 7 7.7092 -0.3669 4.2414 13 14 10.3467 -0.2947 3.3967 14 1 10.9960 -0.1797 2.0661 15 1 10.7601 0.8488 4.2491 16 1 10.7597 -1.5672 4.0411 17 6 3.5806 -1.1971 0.0006 18 6 4.3340 -2.5023 0.0017 19 6 2.1980 -1.1970 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8898 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6584 2.1326 -0.0005 24 1 4.1205 2.1325 -0.0099 25 1 6.0236 0.6937 2.3041 26 1 6.0235 -1.0797 2.1508 27 1 8.0967 -0.4436 5.1273 28 1 4.5157 -2.8177 -1.0256 29 1 5.2865 -2.3715 0.5155 30 1 3.7449 -3.2614 0.5162 31 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788256.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:34 Heat of formation + Delta-G solvation = -57.304697 kcal Electronic energy + Delta-G solvation = -14405.189778 eV Core-core repulsion = 11969.422106 eV Total energy + Delta-G solvation = -2435.767672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.32113 -36.66854 -35.25488 -34.48931 -32.90832 -30.68809 -28.21816 -27.63921 -25.24543 -23.22893 -21.78014 -19.06048 -18.48146 -17.31102 -16.80629 -16.61691 -15.80911 -15.45443 -14.92190 -14.79684 -14.60576 -14.25622 -14.04478 -13.87277 -13.35351 -13.20451 -12.85916 -12.79625 -12.68224 -12.53065 -12.41875 -12.15458 -11.95063 -11.61689 -10.83813 -10.70535 -9.90795 -9.65825 -9.04946 -8.30439 -6.46305 -0.00862 0.40614 1.18356 1.39434 1.41202 1.55372 2.11318 2.37091 2.68915 3.00123 3.15719 3.82670 3.91906 3.99294 4.35575 4.44213 4.65720 4.71740 4.81248 4.87588 4.94143 5.00912 5.07072 5.09266 5.16195 5.34901 5.46625 5.53510 5.54813 5.57554 5.90759 6.07056 6.67966 7.23509 8.82539 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.006286 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.753022 B = 4453.183209 C = 4563.891958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.057 4.057 3 C -0.158 4.158 4 C -0.082 4.082 5 C -0.483 4.483 6 S 1.354 4.646 7 O -0.937 6.937 8 C -0.268 4.268 9 C -0.539 4.539 10 H 0.070 0.930 11 C 0.011 3.989 12 N -0.925 5.925 13 Si 0.968 3.032 14 H -0.257 1.257 15 H -0.284 1.284 16 H -0.262 1.262 17 C -0.007 4.007 18 C -0.141 4.141 19 C -0.143 4.143 20 H 0.089 0.911 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.134 0.866 24 H 0.091 0.909 25 H -0.010 1.010 26 H 0.073 0.927 27 H 0.268 0.732 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.297 -7.935 -9.101 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.057 4.057 3 C -0.177 4.177 4 C -0.102 4.102 5 C -0.581 4.581 6 S 1.557 4.443 7 O -0.933 6.933 8 C -0.407 4.407 9 C -0.578 4.578 10 H 0.088 0.912 11 C -0.189 4.189 12 N -0.563 5.563 13 Si 0.791 3.209 14 H -0.180 1.180 15 H -0.210 1.210 16 H -0.187 1.187 17 C -0.008 4.008 18 C -0.198 4.198 19 C -0.161 4.161 20 H 0.107 0.893 21 H 0.105 0.895 22 H 0.090 0.910 23 H 0.152 0.848 24 H 0.110 0.890 25 H 0.009 0.991 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.694 -7.855 -9.721 17.116 hybrid contribution 0.015 2.484 1.920 3.140 sum -11.680 -5.371 -7.801 15.037 Atomic orbital electron populations 1.20905 0.88089 1.04084 1.03752 1.20517 0.98104 0.92531 0.94536 1.21271 0.93036 0.99435 1.03999 1.21069 0.95840 0.96987 0.96275 1.27693 1.19407 0.97666 1.13316 1.67968 0.80791 1.04518 0.91025 1.92834 1.80333 1.44156 1.75937 1.25098 1.01821 1.00932 1.12809 1.20955 0.90211 1.52527 0.94089 0.91194 1.25988 1.03968 0.93687 0.95269 1.70111 1.37474 1.49666 0.99091 0.85349 0.78249 0.78294 0.78990 1.18018 1.21043 1.18657 1.20024 0.94555 0.94116 0.92091 1.21262 1.00489 0.92415 1.05590 1.21470 0.93215 0.98994 1.02444 0.89254 0.89467 0.91012 0.84772 0.89044 0.99148 0.90915 0.92356 0.86646 0.91082 0.88224 0.81854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.01 71.24 0.71 -1.09 16 2 C -0.06 -1.44 5.88 -19.86 -0.12 -1.56 16 3 C -0.16 -5.01 9.70 22.27 0.22 -4.80 16 4 C -0.08 -3.32 9.45 22.27 0.21 -3.11 16 5 C -0.48 -18.51 5.63 22.27 0.13 -18.39 16 6 S 1.35 57.89 11.72 -56.49 -0.66 57.23 16 7 O -0.94 -51.14 16.78 -148.98 -2.50 -53.64 16 8 C -0.27 -14.33 5.53 71.24 0.39 -13.94 16 9 C -0.54 -30.85 9.13 25.60 0.23 -30.61 16 10 H 0.07 3.81 7.71 -2.91 -0.02 3.79 16 11 C 0.01 0.65 5.46 84.65 0.46 1.12 16 12 N -0.92 -56.03 13.29 21.45 0.28 -55.74 16 13 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 14 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 C -0.01 -0.19 5.88 -19.86 -0.12 -0.31 16 18 C -0.14 -3.02 9.56 71.24 0.68 -2.34 16 19 C -0.14 -3.50 9.36 22.27 0.21 -3.29 16 20 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 22 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 23 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 24 H 0.09 4.17 7.34 -2.91 -0.02 4.15 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 26 H 0.07 3.73 7.51 -2.39 -0.02 3.71 16 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.74 6.02 -2.39 -0.01 1.72 16 30 H 0.10 1.63 8.08 -2.39 -0.02 1.61 16 31 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -80.91 279.92 3.27 -77.64 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.11 Total: 7.02 kcal Atomic # 6 Polarization: -81.32 SS G_CDS: 3.01 Total: -78.31 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.28 Total: -55.74 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -2.50 Total: -53.64 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 57.89 SS G_CDS: -0.66 Total: 57.23 kcal Total: -80.91 3.27 -77.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788256.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.331 kcal (2) G-P(sol) polarization free energy of solvation -80.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds