Wall clock time and date at job start Mon Mar 30 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42100 * 109.46600 * 296.38822 * 11 10 9 13 13 C 1.81397 * 103.00143 * 180.02562 * 11 10 9 14 14 C 1.50695 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.38239 * 119.99643 * 269.72723 * 14 13 11 16 16 C 1.38244 * 119.99539 * 179.76378 * 15 14 13 17 17 C 1.38233 * 119.99633 * 0.50625 * 16 15 14 18 18 C 1.38233 * 120.00501 * 359.74793 * 17 16 15 19 19 C 1.38231 * 119.99763 * 359.97438 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 22 22 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 25 25 H 1.09007 * 109.46846 * 299.99983 * 13 11 10 26 26 H 1.09007 * 109.47453 * 59.99610 * 13 11 10 27 27 H 1.07995 * 120.00144 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.99396 * 180.22744 * 16 15 14 29 29 H 1.08008 * 119.99496 * 179.72174 * 17 16 15 30 30 H 1.08001 * 120.00152 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.99726 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 -0.0002 12 8 0.5855 -5.3458 1.1997 13 6 2.6650 -6.4702 0.0007 14 6 2.0635 -7.8519 -0.0005 15 6 1.7916 -8.4883 1.1962 16 6 1.2353 -9.7539 1.1951 17 6 0.9606 -10.3870 -0.0026 18 6 1.2374 -9.7527 -1.1992 19 6 1.7883 -8.4850 -1.1981 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8902 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8905 25 1 3.2818 -6.3421 -0.8889 26 1 3.2806 -6.3423 0.8911 27 1 2.0107 -7.9955 2.1318 28 1 1.0195 -10.2496 2.1300 29 1 0.5301 -11.3776 -0.0034 30 1 1.0231 -10.2476 -2.1349 31 1 2.0049 -7.9895 -2.1331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788399.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:09 Heat of formation + Delta-G solvation = -28.733105 kcal Electronic energy + Delta-G solvation = -13856.834849 eV Core-core repulsion = 11422.306133 eV Total energy + Delta-G solvation = -2434.528715 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17476 -35.11888 -33.67124 -32.77617 -30.90350 -30.87968 -27.08369 -25.24774 -22.58829 -21.75057 -20.86065 -17.13500 -16.74335 -16.43863 -15.31818 -15.25290 -14.79750 -14.52450 -14.09814 -13.77956 -13.43210 -13.02454 -12.71972 -12.53624 -12.29996 -11.64859 -11.31474 -11.18449 -11.00632 -10.95437 -10.73952 -10.15639 -10.13719 -9.56807 -9.27213 -8.94374 -8.49985 -8.41562 -7.63091 -6.04504 -4.08869 1.19252 1.38290 2.13394 3.19082 3.29124 3.35692 3.38933 3.82064 4.26960 4.42920 4.74171 4.82981 4.97181 5.09861 5.27322 5.30440 5.48602 5.61514 5.69318 5.95308 6.02758 6.03323 6.14891 6.42856 6.48206 6.59237 6.80956 6.97747 7.49641 7.61264 7.90548 8.31911 8.95876 9.55295 11.06112 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.070416 B = 0.004372 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.540703 B = 6402.564277 C = 6463.757318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.418 4.418 11 S 1.224 4.776 12 O -0.845 6.845 13 C -0.420 4.420 14 C -0.054 4.054 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.130 4.130 18 C -0.119 4.119 19 C -0.119 4.119 20 H 0.263 0.737 21 H 0.029 0.971 22 H 0.023 0.977 23 H 0.105 0.895 24 H 0.071 0.929 25 H 0.123 0.877 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 -18.033 -4.921 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.557 4.557 11 S 1.425 4.575 12 O -0.840 6.840 13 C -0.553 4.553 14 C -0.055 4.055 15 C -0.133 4.133 16 C -0.135 4.135 17 C -0.148 4.148 18 C -0.137 4.137 19 C -0.138 4.138 20 H 0.072 0.928 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.123 0.877 24 H 0.090 0.910 25 H 0.141 0.859 26 H 0.108 0.892 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.704 -18.085 -4.885 18.927 hybrid contribution 1.884 1.228 1.913 2.953 sum 4.588 -16.857 -2.971 17.721 Atomic orbital electron populations 1.69958 1.06056 1.26875 1.50244 1.25045 0.94908 0.99336 0.95158 0.86541 0.79763 0.83227 0.78168 1.20461 1.21131 1.19940 1.21158 0.93014 0.90440 1.51301 0.92489 1.18790 0.92983 0.90146 0.98136 1.27634 1.09615 1.12530 1.05961 1.70530 0.87368 0.86767 1.12868 1.93094 1.56160 1.83912 1.50833 1.26874 1.14888 1.05839 1.07724 1.19208 0.98671 0.94040 0.93611 1.21121 0.99235 0.95108 0.97833 1.21114 0.99061 0.95145 0.98178 1.21125 1.00976 1.00026 0.92682 1.21125 0.99277 0.95227 0.98027 1.21094 0.99889 0.95282 0.97506 0.92767 0.95315 0.95887 0.87651 0.90956 0.85915 0.89152 0.86365 0.86213 0.86263 0.85899 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.42 -8.19 5.86 37.16 0.22 -7.97 16 11 S 1.22 20.00 13.14 -107.50 -1.41 18.59 16 12 O -0.84 -19.23 18.14 -35.23 -0.64 -19.87 16 13 C -0.42 -5.45 6.05 36.00 0.22 -5.23 16 14 C -0.05 -0.72 5.14 -104.63 -0.54 -1.25 16 15 C -0.11 -1.59 9.70 -39.58 -0.38 -1.97 16 16 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 17 C -0.13 -1.35 10.05 -39.59 -0.40 -1.75 16 18 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 19 C -0.12 -1.30 9.70 -39.59 -0.38 -1.68 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.11 1.75 8.14 -51.92 -0.42 1.33 16 24 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 25 H 0.12 1.19 8.09 -51.92 -0.42 0.77 16 26 H 0.09 1.24 8.08 -51.92 -0.42 0.82 16 27 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 286.65 15.07 4.32 4.32 Total: -1.00 -35.86 286.65 -8.82 -44.67 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.19 Total: -2.25 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: -2.61 Total: -35.87 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.64 Total: -19.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 20.00 SS G_CDS: -1.41 Total: 18.59 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.86 -8.82 -44.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788399.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.940 kcal (2) G-P(sol) polarization free energy of solvation -35.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds