Wall clock time and date at job start Mon Mar 30 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42100 * 109.46600 * 296.38822 * 11 10 9 13 13 C 1.81397 * 103.00143 * 180.02562 * 11 10 9 14 14 C 1.50695 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.38239 * 119.99643 * 269.72723 * 14 13 11 16 16 C 1.38244 * 119.99539 * 179.76378 * 15 14 13 17 17 C 1.38233 * 119.99633 * 0.50625 * 16 15 14 18 18 C 1.38233 * 120.00501 * 359.74793 * 17 16 15 19 19 C 1.38231 * 119.99763 * 359.97438 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 22 22 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 25 25 H 1.09007 * 109.46846 * 299.99983 * 13 11 10 26 26 H 1.09007 * 109.47453 * 59.99610 * 13 11 10 27 27 H 1.07995 * 120.00144 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.99396 * 180.22744 * 16 15 14 29 29 H 1.08008 * 119.99496 * 179.72174 * 17 16 15 30 30 H 1.08001 * 120.00152 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.99726 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 -0.0002 12 8 0.5855 -5.3458 1.1997 13 6 2.6650 -6.4702 0.0007 14 6 2.0635 -7.8519 -0.0005 15 6 1.7916 -8.4883 1.1962 16 6 1.2353 -9.7539 1.1951 17 6 0.9606 -10.3870 -0.0026 18 6 1.2374 -9.7527 -1.1992 19 6 1.7883 -8.4850 -1.1981 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8902 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8905 25 1 3.2818 -6.3421 -0.8889 26 1 3.2806 -6.3423 0.8911 27 1 2.0107 -7.9955 2.1318 28 1 1.0195 -10.2496 2.1300 29 1 0.5301 -11.3776 -0.0034 30 1 1.0231 -10.2476 -2.1349 31 1 2.0049 -7.9895 -2.1331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788399.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:09 Heat of formation + Delta-G solvation = -52.889354 kcal Electronic energy + Delta-G solvation = -13857.882342 eV Core-core repulsion = 11422.306133 eV Total energy + Delta-G solvation = -2435.576209 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.04188 -36.74519 -35.73642 -33.71799 -32.87781 -31.75554 -28.15618 -27.21296 -23.45693 -23.34491 -22.12636 -18.79375 -18.31192 -17.61037 -16.59864 -16.35542 -16.22149 -16.10143 -15.60132 -15.21259 -14.42596 -14.31681 -14.06041 -13.91567 -13.52125 -13.41957 -12.94434 -12.73668 -12.59764 -12.10029 -12.00552 -11.92548 -11.84617 -11.51996 -10.97152 -10.60044 -9.81521 -9.67147 -9.00529 -8.22044 -6.35768 0.16260 0.51485 0.92405 1.39440 1.41620 1.52225 1.85192 2.39682 2.86886 2.98833 3.10051 3.73321 3.93158 4.18057 4.25821 4.29933 4.36452 4.48365 4.65278 4.73965 4.78866 5.01250 5.14179 5.19548 5.41341 5.50118 5.58235 5.64215 5.67602 5.76039 6.14409 6.16562 6.79223 7.33883 8.89044 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.070416 B = 0.004372 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.540703 B = 6402.564277 C = 6463.757318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.035 3.965 10 C -0.419 4.419 11 S 1.273 4.727 12 O -0.918 6.918 13 C -0.401 4.401 14 C -0.081 4.081 15 C -0.146 4.146 16 C -0.132 4.132 17 C -0.128 4.128 18 C -0.119 4.119 19 C -0.117 4.117 20 H 0.266 0.734 21 H 0.025 0.975 22 H -0.027 1.027 23 H 0.143 0.857 24 H 0.058 0.942 25 H 0.168 0.832 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -19.261 -7.179 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.003 4.003 10 C -0.557 4.557 11 S 1.477 4.523 12 O -0.913 6.913 13 C -0.537 4.537 14 C -0.083 4.083 15 C -0.166 4.166 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.136 4.136 19 C -0.136 4.136 20 H 0.074 0.926 21 H 0.043 0.957 22 H -0.008 1.008 23 H 0.161 0.839 24 H 0.077 0.923 25 H 0.186 0.814 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.149 0.851 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.222 -19.273 -7.141 20.982 hybrid contribution 1.426 1.390 2.592 3.269 sum 5.649 -17.883 -4.549 19.297 Atomic orbital electron populations 1.70101 1.07922 1.28042 1.51263 1.26056 0.95820 1.03594 0.94546 0.85381 0.78316 0.78001 0.78947 1.18719 1.21044 1.19093 1.21658 0.93684 0.91799 1.51076 0.91677 1.18656 0.93690 0.92421 0.95562 1.27559 1.08575 1.12492 1.07072 1.69602 0.87178 0.85199 1.10356 1.92977 1.60232 1.84894 1.53222 1.26669 1.13202 1.04217 1.09627 1.19336 1.00375 0.94151 0.94415 1.21234 1.01172 0.96522 0.97673 1.21357 0.99182 0.94690 0.99780 1.21544 0.99831 1.01093 0.92222 1.21612 0.97824 0.94912 0.99276 1.21537 0.98620 0.95675 0.97757 0.92563 0.95662 1.00837 0.83925 0.92327 0.81392 0.90014 0.88540 0.85111 0.83480 0.82444 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.87 4.98 29.85 0.15 2.02 16 10 C -0.42 -16.42 5.86 71.98 0.42 -16.00 16 11 S 1.27 41.59 13.14 -56.49 -0.74 40.85 16 12 O -0.92 -43.81 18.14 -148.98 -2.70 -46.51 16 13 C -0.40 -9.63 6.05 71.23 0.43 -9.20 16 14 C -0.08 -2.02 5.14 -19.87 -0.10 -2.12 16 15 C -0.15 -4.12 9.70 22.27 0.22 -3.91 16 16 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 17 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 18 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 19 C -0.12 -2.14 9.70 22.27 0.22 -1.92 16 20 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 21 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 22 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 23 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 24 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.17 2.52 8.09 -2.39 -0.02 2.50 16 26 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 27 H 0.10 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -81.83 286.65 2.66 -79.17 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.09 Total: 5.85 kcal Atomic # 6 Polarization: -71.03 SS G_CDS: 2.70 Total: -68.33 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.28 Total: -57.35 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -2.70 Total: -46.51 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 41.59 SS G_CDS: -0.74 Total: 40.85 kcal Total: -81.83 2.66 -79.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788399.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.280 kcal (2) G-P(sol) polarization free energy of solvation -81.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds