Wall clock time and date at job start Mon Mar 30 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38435 * 119.85305 * 2 1 4 4 C 1.37867 * 120.17277 * 180.27619 * 3 2 1 5 5 C 1.50703 * 120.06827 * 179.72144 * 4 3 2 6 6 C 1.39774 * 119.86681 * 359.49625 * 4 3 2 7 7 C 1.47820 * 120.14655 * 180.24597 * 6 4 3 8 8 O 1.21768 * 120.00552 * 6.26787 * 7 6 4 9 9 C 1.41804 * 120.00137 * 186.26476 * 7 6 4 10 10 H 1.08007 * 119.99494 * 0.02562 * 9 7 6 11 11 C 1.40348 * 120.00352 * 179.97438 * 9 7 6 12 12 N 1.30532 * 120.00198 * 0.02562 * 11 9 7 13 13 Si 1.86807 * 120.00032 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46943 * 90.00307 * 13 11 9 15 15 H 1.48505 * 109.46983 * 210.00180 * 13 11 9 16 16 H 1.48504 * 109.47153 * 330.00341 * 13 11 9 17 17 C 1.39701 * 119.70282 * 0.50372 * 6 4 3 18 18 C 1.38024 * 119.83020 * 359.74352 * 17 6 4 19 19 Cl 1.73599 * 119.93653 * 180.02562 * 18 17 6 20 20 H 1.08992 * 109.47334 * 90.00186 * 1 2 3 21 21 H 1.09004 * 109.46584 * 210.00237 * 1 2 3 22 22 H 1.08997 * 109.46744 * 329.99755 * 1 2 3 23 23 H 1.08000 * 119.91365 * 0.02562 * 3 2 1 24 24 H 1.09003 * 109.46892 * 96.83850 * 5 4 3 25 25 H 1.09002 * 109.47486 * 216.83475 * 5 4 3 26 26 H 1.09000 * 109.47067 * 336.84035 * 5 4 3 27 27 H 0.96993 * 120.00145 * 179.97438 * 12 11 9 28 28 H 1.07997 * 120.08131 * 179.73146 * 17 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2007 0.0000 4 6 3.5748 1.2084 -0.0057 5 6 4.3225 2.5168 -0.0121 6 6 4.2776 0.0002 -0.0009 7 6 5.7558 0.0013 -0.0016 8 8 6.3640 1.0504 0.1089 9 6 6.4657 -1.2195 -0.1307 10 1 5.9262 -2.1500 -0.2290 11 6 7.8692 -1.2185 -0.1318 12 7 8.5211 -0.0939 -0.0135 13 14 8.8042 -2.8266 -0.3027 14 1 9.0508 -3.1055 -1.7403 15 1 10.1023 -2.7227 0.4112 16 1 8.0029 -3.9301 0.2853 17 6 3.5768 -1.2083 -0.0010 18 6 2.1966 -1.2016 -0.0004 19 17 1.3230 -2.7018 0.0002 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6523 2.1338 0.0004 24 1 4.6133 2.7740 1.0065 25 1 5.2144 2.4227 -0.6316 26 1 3.6808 3.3000 -0.4155 27 1 9.4911 -0.0932 -0.0139 28 1 4.1137 -2.1454 -0.0016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084914946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:02 Heat of formation + Delta-G solvation = -39.212386 kcal Electronic energy + Delta-G solvation = -14340.666124 eV Core-core repulsion = 11767.806192 eV Total energy + Delta-G solvation = -2572.859932 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.14806 -36.68313 -35.82939 -33.01709 -32.26730 -31.57192 -27.69921 -26.64920 -25.62750 -22.04653 -21.02818 -19.35420 -16.84292 -15.90263 -15.25322 -14.72096 -14.28045 -13.94833 -13.37841 -13.02294 -12.91670 -12.68696 -12.28504 -11.99751 -11.72081 -11.54717 -11.29054 -11.11025 -10.91264 -10.79971 -10.47901 -10.43011 -10.34474 -10.17260 -9.03761 -8.17688 -7.80960 -7.43241 -6.35243 -4.97912 1.61218 1.82674 2.57462 3.01532 3.10096 3.13536 3.86180 3.96150 4.50756 5.14199 5.20654 5.53216 5.67129 5.72670 5.76831 5.84109 6.00313 6.06441 6.25634 6.33396 6.57170 6.61898 6.80078 6.89649 7.00317 7.16851 7.33490 7.51667 7.97286 8.71204 8.74663 10.22105 10.43397 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.008219 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.093957 B = 3405.978274 C = 4435.779252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.048 4.048 5 C -0.110 4.110 6 C -0.101 4.101 7 C 0.387 3.613 8 O -0.531 6.531 9 C -0.514 4.514 10 H 0.074 0.926 11 C 0.081 3.919 12 N -0.733 5.733 13 Si 0.906 3.094 14 H -0.268 1.268 15 H -0.276 1.276 16 H -0.260 1.260 17 C -0.077 4.077 18 C -0.054 4.054 19 Cl -0.091 7.091 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.122 0.878 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.040 0.960 27 H 0.275 0.725 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.373 -1.604 -0.339 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.049 4.049 5 C -0.166 4.166 6 C -0.102 4.102 7 C 0.283 3.717 8 O -0.421 6.421 9 C -0.545 4.545 10 H 0.092 0.908 11 C -0.143 4.143 12 N -0.361 5.361 13 Si 0.729 3.271 14 H -0.193 1.193 15 H -0.201 1.201 16 H -0.184 1.184 17 C -0.096 4.096 18 C -0.081 4.081 19 Cl -0.062 7.062 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.140 0.860 24 H 0.086 0.914 25 H 0.121 0.879 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.034 -1.106 -0.268 10.098 hybrid contribution 0.208 -1.144 -0.079 1.166 sum -9.826 -2.251 -0.346 10.086 Atomic orbital electron populations 1.20780 0.91162 1.02696 1.02185 1.19663 0.95903 0.91527 1.01779 1.20757 0.93641 0.96419 1.03813 1.20328 0.92795 0.96176 0.95588 1.20978 1.00766 0.91420 1.03473 1.21736 1.00014 0.90877 0.97612 1.18050 0.83465 0.90381 0.79780 1.90443 1.68897 1.33733 1.49005 1.20953 0.91722 0.95418 1.46400 0.90792 1.25982 0.98242 0.97367 0.92713 1.69938 1.08718 1.27105 1.30359 0.86375 0.79103 0.82293 0.79282 1.19314 1.20092 1.18416 1.21432 0.90799 0.99744 0.97657 1.20712 0.92300 0.85588 1.09464 1.98300 1.76952 1.33719 1.97269 0.91363 0.91302 0.91731 0.86022 0.91408 0.87925 0.94153 0.91389 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.61 36.01 0.35 -1.08 15 2 C -0.09 -1.46 5.89 -104.44 -0.62 -2.08 15 3 C -0.13 -2.22 9.31 -39.64 -0.37 -2.59 15 4 C -0.05 -1.00 5.92 -104.18 -0.62 -1.62 15 5 C -0.11 -2.20 8.71 36.01 0.31 -1.89 15 6 C -0.10 -2.34 5.88 -104.86 -0.62 -2.96 15 7 C 0.39 10.57 6.85 -34.30 -0.23 10.34 15 8 O -0.53 -15.77 11.91 5.13 0.06 -15.71 15 9 C -0.51 -13.80 8.85 -37.43 -0.33 -14.13 15 10 H 0.07 1.82 6.07 -52.48 -0.32 1.51 15 11 C 0.08 2.11 5.50 -17.31 -0.10 2.02 15 12 N -0.73 -20.39 11.73 55.57 0.65 -19.74 15 13 Si 0.91 18.94 29.56 -169.99 -5.03 13.91 15 14 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 15 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 16 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 17 C -0.08 -1.60 9.21 -39.11 -0.36 -1.96 15 18 C -0.05 -0.98 6.31 -39.55 -0.25 -1.23 15 19 Cl -0.09 -1.41 27.27 -51.86 -1.41 -2.83 15 20 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 21 H 0.07 0.85 6.89 -51.93 -0.36 0.49 15 22 H 0.06 0.71 8.08 -51.93 -0.42 0.29 15 23 H 0.12 1.75 8.05 -52.49 -0.42 1.33 15 24 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 25 H 0.10 2.38 5.90 -51.93 -0.31 2.07 15 26 H 0.04 0.66 8.04 -51.93 -0.42 0.24 15 27 H 0.28 6.87 8.29 -40.82 -0.34 6.54 15 28 H 0.14 2.83 6.25 -52.49 -0.33 2.50 15 LS Contribution 257.67 15.07 3.88 3.88 Total: -1.00 -29.39 257.67 -7.22 -36.61 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -2.55 Total: 1.06 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.83 Total: -17.19 kcal Atomic # 7 Polarization: -20.39 SS G_CDS: 0.65 Total: -19.74 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.06 Total: -15.71 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.41 Total: -2.83 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.39 -7.22 -36.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084914946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.600 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds