Wall clock time and date at job start Mon Mar 30 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38435 * 119.85305 * 2 1 4 4 C 1.37867 * 120.17277 * 180.27619 * 3 2 1 5 5 C 1.50703 * 120.06827 * 179.72144 * 4 3 2 6 6 C 1.39774 * 119.86681 * 359.49625 * 4 3 2 7 7 C 1.47820 * 120.14655 * 180.24597 * 6 4 3 8 8 O 1.21768 * 120.00552 * 6.26787 * 7 6 4 9 9 C 1.41804 * 120.00137 * 186.26476 * 7 6 4 10 10 H 1.08007 * 119.99494 * 0.02562 * 9 7 6 11 11 C 1.40348 * 120.00352 * 179.97438 * 9 7 6 12 12 N 1.30532 * 120.00198 * 0.02562 * 11 9 7 13 13 Si 1.86807 * 120.00032 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46943 * 90.00307 * 13 11 9 15 15 H 1.48505 * 109.46983 * 210.00180 * 13 11 9 16 16 H 1.48504 * 109.47153 * 330.00341 * 13 11 9 17 17 C 1.39701 * 119.70282 * 0.50372 * 6 4 3 18 18 C 1.38024 * 119.83020 * 359.74352 * 17 6 4 19 19 Cl 1.73599 * 119.93653 * 180.02562 * 18 17 6 20 20 H 1.08992 * 109.47334 * 90.00186 * 1 2 3 21 21 H 1.09004 * 109.46584 * 210.00237 * 1 2 3 22 22 H 1.08997 * 109.46744 * 329.99755 * 1 2 3 23 23 H 1.08000 * 119.91365 * 0.02562 * 3 2 1 24 24 H 1.09003 * 109.46892 * 96.83850 * 5 4 3 25 25 H 1.09002 * 109.47486 * 216.83475 * 5 4 3 26 26 H 1.09000 * 109.47067 * 336.84035 * 5 4 3 27 27 H 0.96993 * 120.00145 * 179.97438 * 12 11 9 28 28 H 1.07997 * 120.08131 * 179.73146 * 17 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2007 0.0000 4 6 3.5748 1.2084 -0.0057 5 6 4.3225 2.5168 -0.0121 6 6 4.2776 0.0002 -0.0009 7 6 5.7558 0.0013 -0.0016 8 8 6.3640 1.0504 0.1089 9 6 6.4657 -1.2195 -0.1307 10 1 5.9262 -2.1500 -0.2290 11 6 7.8692 -1.2185 -0.1318 12 7 8.5211 -0.0939 -0.0135 13 14 8.8042 -2.8266 -0.3027 14 1 9.0508 -3.1055 -1.7403 15 1 10.1023 -2.7227 0.4112 16 1 8.0029 -3.9301 0.2853 17 6 3.5768 -1.2083 -0.0010 18 6 2.1966 -1.2016 -0.0004 19 17 1.3230 -2.7018 0.0002 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6523 2.1338 0.0004 24 1 4.6133 2.7740 1.0065 25 1 5.2144 2.4227 -0.6316 26 1 3.6808 3.3000 -0.4155 27 1 9.4911 -0.0932 -0.0139 28 1 4.1137 -2.1454 -0.0016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084914946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:02 Heat of formation + Delta-G solvation = -55.634203 kcal Electronic energy + Delta-G solvation = -14341.378227 eV Core-core repulsion = 11767.806192 eV Total energy + Delta-G solvation = -2573.572035 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71056 -38.48603 -37.29053 -34.91864 -33.82200 -33.14426 -29.47024 -28.06546 -27.32525 -23.57057 -22.73699 -20.98710 -18.68147 -17.76787 -16.76974 -16.37917 -15.79220 -15.37184 -15.03195 -14.71670 -14.40495 -14.29838 -13.66534 -13.55915 -13.19021 -13.10481 -12.80337 -12.71916 -12.54645 -12.48868 -12.07552 -11.91568 -11.88902 -11.73498 -10.99615 -9.67537 -9.45877 -9.32703 -8.32653 -7.07970 0.06601 0.31948 1.18075 1.35877 1.36921 1.52779 2.14736 2.19460 2.72724 3.66782 3.83801 3.88239 4.07574 4.28253 4.37886 4.66603 4.76224 4.79603 4.83731 4.92375 5.00372 5.17572 5.23718 5.31364 5.39023 5.45451 5.73625 5.96547 5.97925 6.69065 6.75891 8.22496 8.46173 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.008219 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.093957 B = 3405.978274 C = 4435.779252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 C -0.119 4.119 4 C -0.063 4.063 5 C -0.102 4.102 6 C -0.143 4.143 7 C 0.365 3.635 8 O -0.571 6.571 9 C -0.546 4.546 10 H 0.087 0.913 11 C 0.028 3.972 12 N -0.782 5.782 13 Si 0.989 3.011 14 H -0.259 1.259 15 H -0.267 1.267 16 H -0.250 1.250 17 C -0.084 4.084 18 C -0.060 4.060 19 Cl -0.065 7.065 20 H 0.087 0.913 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.162 0.838 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.283 0.717 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 -2.632 -0.512 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.074 4.074 3 C -0.137 4.137 4 C -0.064 4.064 5 C -0.158 4.158 6 C -0.144 4.144 7 C 0.265 3.735 8 O -0.464 6.464 9 C -0.576 4.576 10 H 0.105 0.895 11 C -0.191 4.191 12 N -0.411 5.411 13 Si 0.808 3.192 14 H -0.183 1.183 15 H -0.191 1.191 16 H -0.173 1.173 17 C -0.103 4.103 18 C -0.087 4.087 19 Cl -0.036 7.036 20 H 0.105 0.895 21 H 0.093 0.907 22 H 0.109 0.891 23 H 0.179 0.821 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.576 -2.144 -0.442 12.765 hybrid contribution 0.823 -0.815 -0.024 1.159 sum -11.752 -2.959 -0.466 12.128 Atomic orbital electron populations 1.20904 0.87628 1.04338 1.03818 1.20205 0.98289 0.90470 0.98404 1.21106 0.92052 0.98488 1.02035 1.20499 0.94520 0.95210 0.96158 1.20811 1.00000 0.92797 1.02189 1.21385 0.98027 0.93202 1.01829 1.18664 0.85920 0.90121 0.78819 1.90403 1.70647 1.34746 1.50649 1.21422 0.92934 0.96041 1.47223 0.89527 1.27137 0.99002 1.01556 0.91402 1.70061 1.09494 1.30072 1.31500 0.85136 0.77527 0.76850 0.79706 1.18301 1.19089 1.17291 1.21328 0.92228 0.98514 0.98235 1.20791 0.91547 0.87515 1.08805 1.98306 1.75971 1.32180 1.97114 0.89488 0.90731 0.89150 0.82087 0.92523 0.91947 0.90122 0.90682 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.61 71.24 0.68 -1.58 15 2 C -0.07 -2.18 5.89 -19.74 -0.12 -2.29 15 3 C -0.12 -3.78 9.31 22.23 0.21 -3.58 15 4 C -0.06 -2.62 5.92 -19.58 -0.12 -2.74 15 5 C -0.10 -4.15 8.71 71.24 0.62 -3.53 15 6 C -0.14 -6.87 5.88 -20.02 -0.12 -6.98 15 7 C 0.37 21.17 6.85 25.69 0.18 21.35 15 8 O -0.57 -36.31 11.91 -4.57 -0.05 -36.37 15 9 C -0.55 -30.59 8.85 23.67 0.21 -30.38 15 10 H 0.09 4.43 6.07 -2.91 -0.02 4.41 15 11 C 0.03 1.53 5.50 85.40 0.47 2.00 15 12 N -0.78 -45.56 11.73 21.89 0.26 -45.30 15 13 Si 0.99 39.42 29.56 68.60 2.03 41.45 15 14 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 15 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 16 H -0.25 -9.41 7.11 99.48 0.71 -8.70 15 17 C -0.08 -3.51 9.21 22.57 0.21 -3.30 15 18 C -0.06 -2.06 6.31 22.29 0.14 -1.92 15 19 Cl -0.06 -1.84 27.27 -2.72 -0.07 -1.91 15 20 H 0.09 1.55 8.14 -2.39 -0.02 1.54 15 21 H 0.07 1.48 6.89 -2.38 -0.02 1.47 15 22 H 0.09 1.45 8.08 -2.39 -0.02 1.43 15 23 H 0.16 3.83 8.05 -2.91 -0.02 3.80 15 24 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.06 3.07 5.90 -2.39 -0.01 3.06 15 26 H 0.08 2.53 8.04 -2.39 -0.02 2.51 15 27 H 0.28 14.71 8.29 -92.71 -0.77 13.94 15 28 H 0.13 5.47 6.25 -2.91 -0.02 5.45 15 Total: -1.00 -68.05 257.67 5.71 -62.34 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.19 Total: 12.74 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 2.37 Total: -32.95 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.26 Total: -45.30 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.05 Total: -36.37 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal Total: -68.05 5.71 -62.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084914946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.709 kcal (2) G-P(sol) polarization free energy of solvation -68.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds