Wall clock time and date at job start Mon Mar 30 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37844 * 119.93204 * 2 1 4 4 C 1.39773 * 119.85675 * 179.70378 * 3 2 1 5 5 C 1.47764 * 120.13999 * 180.30445 * 4 3 2 6 6 O 1.21774 * 119.99895 * 186.33108 * 5 4 3 7 7 C 1.41800 * 119.99802 * 6.32312 * 5 4 3 8 8 H 1.08004 * 120.00199 * 7.08129 * 7 5 4 9 9 C 1.40351 * 119.99777 * 187.07109 * 7 5 4 10 10 N 1.30531 * 120.00215 * 353.98908 * 9 7 5 11 11 Si 1.86805 * 119.99867 * 173.98903 * 9 7 5 12 12 H 1.48497 * 109.46966 * 94.98852 * 11 9 7 13 13 H 1.48498 * 109.46831 * 214.98984 * 11 9 7 14 14 H 1.48502 * 109.46953 * 334.98763 * 11 9 7 15 15 C 1.39803 * 119.72048 * 0.55406 * 4 3 2 16 16 C 1.50703 * 120.07282 * 179.71895 * 15 4 3 17 17 C 1.37800 * 119.85613 * 359.45004 * 15 4 3 18 18 C 1.38584 * 119.93073 * 179.97438 * 2 1 3 19 19 Cl 1.73597 * 119.85680 * 0.03991 * 18 2 1 20 20 H 1.09008 * 109.46704 * 270.01995 * 1 2 3 21 21 H 1.08999 * 109.47426 * 30.01011 * 1 2 3 22 22 H 1.08999 * 109.47572 * 150.01860 * 1 2 3 23 23 H 1.08005 * 120.06818 * 359.96526 * 3 2 1 24 24 H 0.97000 * 119.99661 * 179.97438 * 10 9 7 25 25 H 1.08996 * 109.47370 * 276.61788 * 16 15 4 26 26 H 1.09001 * 109.46842 * 36.61833 * 16 15 4 27 27 H 1.09003 * 109.46963 * 156.61407 * 16 15 4 28 28 H 1.07998 * 119.93055 * 180.25015 * 17 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1946 0.0000 4 6 3.5925 1.1928 0.0063 5 6 4.3361 2.4696 0.0131 6 8 5.5487 2.4686 -0.0978 7 6 3.6375 3.6962 0.1486 8 1 2.5785 3.6939 0.3610 9 6 4.3222 4.9131 0.0068 10 7 5.6200 4.9194 -0.1327 11 14 3.3762 6.5238 0.0176 12 1 3.3781 7.0897 1.3905 13 1 4.0216 7.4832 -0.9142 14 1 1.9768 6.2789 -0.4149 15 6 4.2840 -0.0222 0.0008 16 6 5.7910 -0.0334 0.0011 17 6 3.5847 -1.2096 0.0007 18 6 2.1984 -1.2010 0.0005 19 17 1.3249 -2.7012 0.0002 20 1 -0.3633 0.0004 1.0278 21 1 -0.3634 0.8899 -0.5140 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6547 2.1299 -0.0006 24 1 6.0931 5.7604 -0.2311 25 1 6.1555 0.0870 -1.0191 26 1 6.1603 0.7858 0.6180 27 1 6.1472 -0.9813 0.4046 28 1 4.1177 -2.1489 0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084915535.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:32 Heat of formation + Delta-G solvation = -55.372002 kcal Electronic energy + Delta-G solvation = -14342.357846 eV Core-core repulsion = 11768.797181 eV Total energy + Delta-G solvation = -2573.560665 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.71039 -38.48135 -37.25562 -35.04638 -34.29939 -32.08748 -30.23142 -28.57060 -25.88392 -24.52476 -22.71492 -20.77444 -18.53309 -17.46280 -16.95758 -16.70116 -15.87057 -15.36597 -15.02485 -14.80891 -14.40672 -13.74349 -13.72707 -13.59070 -13.13912 -13.13667 -12.94242 -12.74473 -12.64226 -12.39406 -12.17924 -12.02794 -11.92293 -11.54592 -10.97342 -9.67813 -9.44341 -9.32223 -8.32045 -7.05605 -0.00161 0.38488 1.13774 1.37388 1.39246 1.55657 2.14467 2.21048 2.73470 3.67351 3.84681 3.87032 4.10033 4.25953 4.39597 4.59097 4.74523 4.83064 4.84637 4.91380 4.98247 5.19479 5.21555 5.26816 5.39180 5.51611 5.74523 5.94655 5.99163 6.70592 6.78067 8.24089 8.47671 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.034225 B = 0.007174 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.921517 B = 3902.216768 C = 4697.195712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.084 4.084 4 C -0.137 4.137 5 C 0.363 3.637 6 O -0.573 6.573 7 C -0.543 4.543 8 H 0.092 0.908 9 C 0.027 3.973 10 N -0.784 5.784 11 Si 0.991 3.009 12 H -0.260 1.260 13 H -0.269 1.269 14 H -0.245 1.245 15 C -0.069 4.069 16 C -0.100 4.100 17 C -0.119 4.119 18 C -0.037 4.037 19 Cl -0.058 7.058 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.140 0.860 24 H 0.282 0.718 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.938 -8.013 0.345 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 C -0.102 4.102 4 C -0.138 4.138 5 C 0.262 3.738 6 O -0.467 6.467 7 C -0.573 4.573 8 H 0.110 0.890 9 C -0.193 4.193 10 N -0.413 5.413 11 Si 0.810 3.190 12 H -0.185 1.185 13 H -0.194 1.194 14 H -0.168 1.168 15 C -0.069 4.069 16 C -0.157 4.157 17 C -0.137 4.137 18 C -0.064 4.064 19 Cl -0.029 7.029 20 H 0.103 0.897 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.158 0.842 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.284 -8.126 0.267 12.341 hybrid contribution 0.042 0.632 -0.037 0.635 sum -9.242 -7.494 0.231 11.901 Atomic orbital electron populations 1.20868 0.88023 1.04078 1.03668 1.20001 0.98217 0.90574 1.00897 1.21417 0.92701 0.98095 0.97979 1.21607 0.95411 0.96640 1.00183 1.18732 0.88294 0.87826 0.78952 1.90403 1.16656 1.88804 1.50823 1.21422 0.97948 0.92253 1.45672 0.88985 1.27188 0.95464 1.05233 0.91372 1.70078 1.10350 1.29693 1.31186 0.85090 0.79476 0.75129 0.79322 1.18486 1.19408 1.16823 1.20257 0.97101 0.91868 0.97721 1.20795 0.90458 1.02187 1.02210 1.20983 0.92133 0.98214 1.02393 1.20958 0.92050 0.87006 1.06402 1.98314 1.76210 1.31510 1.96911 0.89715 0.90163 0.90188 0.84185 0.90741 0.92564 0.91593 0.90562 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 9.61 71.23 0.68 -1.94 15 2 C -0.10 -3.12 5.88 -19.88 -0.12 -3.24 15 3 C -0.08 -3.30 9.06 22.55 0.20 -3.09 15 4 C -0.14 -6.48 5.88 -20.01 -0.12 -6.60 15 5 C 0.36 20.67 6.84 25.67 0.18 20.84 15 6 O -0.57 -36.26 11.92 -4.59 -0.05 -36.32 15 7 C -0.54 -29.54 8.80 23.67 0.21 -29.33 15 8 H 0.09 4.47 6.18 -2.91 -0.02 4.45 15 9 C 0.03 1.41 5.50 85.40 0.47 1.88 15 10 N -0.78 -45.21 11.76 21.89 0.26 -44.95 15 11 Si 0.99 38.31 29.57 68.60 2.03 40.34 15 12 H -0.26 -9.62 7.11 99.48 0.71 -8.92 15 13 H -0.27 -10.05 7.11 99.48 0.71 -9.34 15 14 H -0.25 -8.79 7.11 99.48 0.71 -8.09 15 15 C -0.07 -2.91 5.92 -19.59 -0.12 -3.02 15 16 C -0.10 -4.19 8.74 71.24 0.62 -3.57 15 17 C -0.12 -4.07 9.44 22.26 0.21 -3.86 15 18 C -0.04 -1.19 6.33 22.45 0.14 -1.05 15 19 Cl -0.06 -1.47 27.27 -2.72 -0.07 -1.55 15 20 H 0.08 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.08 1.74 8.08 -2.39 -0.02 1.72 15 22 H 0.08 1.71 6.89 -2.39 -0.02 1.69 15 23 H 0.14 5.28 6.31 -2.91 -0.02 5.26 15 24 H 0.28 14.55 8.29 -92.71 -0.77 13.78 15 25 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 26 H 0.07 3.28 5.85 -2.39 -0.01 3.26 15 27 H 0.08 2.52 8.04 -2.39 -0.02 2.51 15 28 H 0.15 4.25 8.05 -2.91 -0.02 4.23 15 Total: -1.00 -66.42 257.79 5.71 -60.72 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 1.18 Total: 14.73 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 2.37 Total: -32.98 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.26 Total: -44.95 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.05 Total: -36.32 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.55 kcal Total: -66.42 5.71 -60.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084915535.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.345 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds