Wall clock time and date at job start Mon Mar 30 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38383 * 119.83381 * 2 1 4 4 C 1.38050 * 120.14325 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 120.09712 * 179.97438 * 4 3 2 6 6 C 1.39919 * 119.79985 * 0.27454 * 4 3 2 7 7 C 1.47752 * 120.16415 * 179.75015 * 6 4 3 8 8 O 1.21776 * 119.99961 * 359.97438 * 7 6 4 9 9 C 1.41820 * 120.00213 * 179.97438 * 7 6 4 10 10 H 1.07996 * 119.99472 * 359.97438 * 9 7 6 11 11 C 1.40338 * 120.00002 * 180.02562 * 9 7 6 12 12 N 1.30537 * 120.00102 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99891 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47334 * 89.99770 * 13 11 9 15 15 H 1.48508 * 109.47049 * 209.99661 * 13 11 9 16 16 H 1.48497 * 109.47264 * 329.99360 * 13 11 9 17 17 C 1.39748 * 119.66857 * 359.51005 * 6 4 3 18 18 C 1.37870 * 119.85582 * 0.45023 * 17 6 4 19 19 C 1.50694 * 119.90165 * 179.78792 * 18 17 6 20 20 H 1.09003 * 109.46725 * 90.00600 * 1 2 3 21 21 H 1.08998 * 109.47462 * 210.00347 * 1 2 3 22 22 H 1.08998 * 109.47079 * 330.01050 * 1 2 3 23 23 H 1.07997 * 119.93169 * 359.96843 * 3 2 1 24 24 H 0.97003 * 119.99737 * 180.02562 * 12 11 9 25 25 H 1.08002 * 120.06724 * 180.25124 * 17 6 4 26 26 H 1.09008 * 109.47162 * 270.01686 * 19 18 17 27 27 H 1.09007 * 109.47311 * 30.01564 * 19 18 17 28 28 H 1.08996 * 109.47409 * 150.01954 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2004 0.0000 4 6 3.5759 1.2079 0.0005 5 17 4.4383 2.7145 -0.0001 6 6 4.2778 -0.0025 -0.0047 7 6 5.7553 -0.0039 -0.0098 8 8 6.3652 1.0502 -0.0098 9 6 6.4633 -1.2327 -0.0146 10 1 5.9224 -2.1675 -0.0141 11 6 7.8667 -1.2340 -0.0188 12 7 8.5204 -0.1041 -0.0189 13 14 8.7991 -2.8526 -0.0259 14 1 9.0420 -3.2779 -1.4278 15 1 10.0991 -2.6780 0.6707 16 1 7.9978 -3.8885 0.6740 17 6 3.5744 -1.2100 -0.0001 18 6 2.1957 -1.2013 0.0002 19 6 1.4362 -2.5028 0.0003 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5137 23 1 1.6516 2.1335 -0.0005 24 1 9.4904 -0.1051 -0.0222 25 1 4.1097 -2.1481 -0.0001 26 1 1.2531 -2.8168 -1.0274 27 1 2.0218 -3.2652 0.5143 28 1 0.4844 -2.3680 0.5140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084916830.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:28 Heat of formation + Delta-G solvation = -31.173241 kcal Electronic energy + Delta-G solvation = -14343.719514 eV Core-core repulsion = 11771.208186 eV Total energy + Delta-G solvation = -2572.511328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.09391 -36.44150 -35.49845 -32.78361 -32.23124 -31.72918 -28.01827 -26.27720 -25.81913 -21.90653 -21.36923 -19.04672 -16.63686 -15.90395 -15.27220 -14.91258 -14.11997 -14.08657 -13.22530 -13.00193 -12.76430 -12.62512 -12.58793 -12.35404 -11.72281 -11.47604 -11.36955 -10.91948 -10.91456 -10.76215 -10.36790 -10.26103 -10.13028 -9.92704 -8.97016 -8.13417 -7.71494 -7.29776 -6.25302 -4.88538 1.65322 1.84591 3.04839 3.10049 3.12758 3.15690 3.90565 4.00589 4.57615 5.10769 5.25214 5.36903 5.41225 5.63618 5.66284 5.77790 5.87637 5.97769 6.01275 6.09657 6.19224 6.46683 6.58292 6.84959 6.97413 7.11476 7.25035 7.47844 8.02672 8.79435 8.82044 10.32461 10.54394 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025439 B = 0.008901 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.390939 B = 3144.798733 C = 4224.737584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.093 4.093 3 C -0.126 4.126 4 C -0.015 4.015 5 Cl -0.051 7.051 6 C -0.099 4.099 7 C 0.381 3.619 8 O -0.514 6.514 9 C -0.516 4.516 10 H 0.072 0.928 11 C 0.080 3.920 12 N -0.733 5.733 13 Si 0.905 3.095 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.262 1.262 17 C -0.080 4.080 18 C -0.104 4.104 19 C -0.111 4.111 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.122 0.878 24 H 0.274 0.726 25 H 0.136 0.864 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.670 -3.158 0.015 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.042 4.042 5 Cl -0.021 7.021 6 C -0.101 4.101 7 C 0.275 3.725 8 O -0.401 6.401 9 C -0.547 4.547 10 H 0.090 0.910 11 C -0.143 4.143 12 N -0.362 5.362 13 Si 0.729 3.271 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.186 1.186 17 C -0.099 4.099 18 C -0.104 4.104 19 C -0.167 4.167 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.140 0.860 24 H 0.085 0.915 25 H 0.154 0.846 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.162 -2.368 0.020 11.411 hybrid contribution 0.462 -0.731 -0.029 0.865 sum -10.700 -3.099 -0.008 11.140 Atomic orbital electron populations 1.20778 0.91534 1.02371 1.01890 1.19581 0.95423 0.92145 1.02197 1.20742 0.92051 0.97839 1.03879 1.21176 0.91493 0.88383 1.03184 1.98354 1.77514 1.29857 1.96402 1.21850 1.00856 0.90520 0.96844 1.18103 0.83357 0.90799 0.80225 1.90589 1.68557 1.33631 1.47334 1.20895 0.91666 0.94670 1.47499 0.90966 1.25959 0.98220 0.97257 0.92849 1.69960 1.08518 1.26974 1.30762 0.86395 0.79131 0.82400 0.79157 1.19431 1.20182 1.18558 1.21384 0.92314 0.98332 0.97860 1.19747 0.93986 0.94530 1.02167 1.20796 0.99638 0.94382 1.01921 0.91577 0.91362 0.92017 0.86025 0.91519 0.84647 0.91563 0.91675 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.59 36.00 0.35 -0.92 15 2 C -0.09 -1.49 5.89 -104.48 -0.62 -2.11 15 3 C -0.13 -2.27 9.47 -39.60 -0.37 -2.65 15 4 C -0.02 -0.34 6.36 -39.02 -0.25 -0.58 15 5 Cl -0.05 -1.14 26.03 -51.86 -1.35 -2.49 15 6 C -0.10 -2.36 5.89 -104.81 -0.62 -2.98 15 7 C 0.38 10.79 6.91 -34.33 -0.24 10.55 15 8 O -0.51 -16.00 12.52 5.12 0.06 -15.93 15 9 C -0.52 -14.09 8.86 -37.42 -0.33 -14.42 15 10 H 0.07 1.78 6.02 -52.49 -0.32 1.47 15 11 C 0.08 2.15 5.50 -17.31 -0.10 2.05 15 12 N -0.73 -21.02 11.73 55.57 0.65 -20.37 15 13 Si 0.91 19.18 29.56 -169.99 -5.03 14.16 15 14 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 15 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 16 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 17 C -0.08 -1.62 9.08 -39.15 -0.36 -1.98 15 18 C -0.10 -1.74 5.87 -104.67 -0.61 -2.36 15 19 C -0.11 -1.38 9.59 36.00 0.35 -1.04 15 20 H 0.07 0.70 8.14 -51.93 -0.42 0.27 15 21 H 0.07 0.69 5.93 -51.93 -0.31 0.38 15 22 H 0.06 0.65 8.08 -51.93 -0.42 0.23 15 23 H 0.12 1.89 8.06 -52.49 -0.42 1.46 15 24 H 0.27 7.06 8.29 -40.82 -0.34 6.72 15 25 H 0.14 2.62 6.21 -52.49 -0.33 2.30 15 26 H 0.07 0.75 8.14 -51.92 -0.42 0.33 15 27 H 0.06 0.77 8.08 -51.92 -0.42 0.35 15 28 H 0.06 0.69 5.93 -51.93 -0.31 0.38 15 LS Contribution 257.06 15.07 3.87 3.87 Total: -1.00 -31.70 257.06 -7.08 -38.78 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.80 Total: -16.43 kcal Atomic # 7 Polarization: -21.02 SS G_CDS: 0.65 Total: -20.37 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.06 Total: -15.93 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.35 Total: -2.49 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.70 -7.08 -38.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084916830.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.604 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds