Wall clock time and date at job start Mon Mar 30 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.76206 * 102.99841 * 179.97438 * 11 10 9 13 13 C 1.38995 * 120.07754 * 359.73050 * 12 11 10 14 14 C 1.38068 * 119.91410 * 179.69486 * 13 12 11 15 15 C 1.38324 * 120.07826 * 0.60105 * 14 13 12 16 16 C 1.38281 * 120.16407 * 359.66892 * 15 14 13 17 17 C 1.50693 * 119.96088 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47503 * 269.98083 * 17 16 15 19 19 C 1.38108 * 120.07983 * 0.03052 * 16 15 14 20 20 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.08001 * 120.04292 * 359.97438 * 13 12 11 26 26 H 1.07991 * 119.95742 * 180.27490 * 14 13 12 27 27 H 1.07997 * 119.91754 * 179.70281 * 15 14 13 28 28 H 1.09001 * 109.47509 * 29.98518 * 17 16 15 29 29 H 1.09007 * 109.47390 * 149.97986 * 17 16 15 30 30 H 0.96699 * 114.00499 * 180.02562 * 18 17 16 31 31 H 1.07991 * 120.04246 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 6 2.6267 -6.4348 0.0004 13 6 3.9565 -6.0303 -0.0062 14 6 4.9635 -6.9748 -0.0005 15 6 4.6504 -8.3221 -0.0007 16 6 3.3286 -8.7282 0.0003 17 6 2.9926 -10.1972 0.0006 18 8 2.8850 -10.6617 -1.3465 19 6 2.3159 -7.7891 0.0008 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5566 0.8902 23 1 2.8718 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 4.2016 -4.9785 -0.0113 26 1 5.9969 -6.6612 -0.0012 27 1 5.4402 -9.0587 -0.0011 28 1 3.7797 -10.7499 0.5137 29 1 2.0445 -10.3531 0.5154 30 1 2.6696 -11.6013 -1.4227 31 1 1.2838 -8.1070 0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085537272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:29 Heat of formation + Delta-G solvation = -42.988605 kcal Electronic energy + Delta-G solvation = -13655.067710 eV Core-core repulsion = 11219.920830 eV Total energy + Delta-G solvation = -2435.146880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.22152 -36.72107 -33.79604 -31.87869 -30.89375 -30.86643 -26.24520 -25.20545 -22.90417 -21.46468 -21.01039 -17.65085 -17.08252 -16.62755 -15.94305 -15.58634 -14.59150 -14.45365 -13.95165 -13.94163 -13.72325 -13.32508 -12.84603 -12.26004 -12.22572 -11.72404 -11.25573 -11.09256 -10.95998 -10.60671 -10.36208 -10.29230 -9.77770 -9.68131 -9.48773 -9.14812 -8.86078 -8.46829 -7.00049 -6.10582 -4.15432 1.26719 1.40575 2.03611 3.04231 3.26242 3.33941 3.37615 3.63238 4.32732 4.38604 4.79796 4.84352 5.08014 5.14845 5.22902 5.25407 5.40288 5.59462 5.85776 5.86813 6.01196 6.05884 6.39109 6.44522 6.54994 6.62951 6.95109 7.39317 7.48607 7.55671 7.84678 8.21250 8.89266 9.48977 11.00325 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.056885 B = 0.004285 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.103868 B = 6532.532894 C = 6924.127859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.081 4.081 11 S -0.140 6.140 12 C -0.074 4.074 13 C -0.129 4.129 14 C -0.103 4.103 15 C -0.117 4.117 16 C -0.082 4.082 17 C 0.120 3.880 18 O -0.566 6.566 19 C -0.087 4.087 20 H 0.263 0.737 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.378 0.622 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 -18.343 0.900 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.228 4.228 11 S 0.107 5.893 12 C -0.188 4.188 13 C -0.153 4.153 14 C -0.123 4.123 15 C -0.139 4.139 16 C -0.084 4.084 17 C 0.042 3.958 18 O -0.372 6.372 19 C -0.111 4.111 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.147 0.853 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.225 0.775 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.926 -17.636 0.781 18.621 hybrid contribution 1.676 0.541 0.150 1.768 sum 7.602 -17.094 0.931 18.732 Atomic orbital electron populations 1.69980 1.06093 1.26870 1.49907 1.25015 0.94913 0.99373 0.94937 0.86443 0.80004 0.83310 0.77716 1.19653 1.20840 1.20854 1.21097 0.93076 0.90075 1.51907 0.92287 1.18933 0.93365 0.89239 0.98707 1.24026 1.02257 0.92639 1.03912 1.85675 1.12473 1.00282 1.90825 1.22018 0.97141 0.97284 1.02307 1.21372 0.91686 1.00412 1.01853 1.21022 0.98981 0.92754 0.99531 1.20932 0.95454 0.95892 1.01600 1.19450 0.93430 0.93830 1.01680 1.20962 0.99905 0.91178 0.83725 1.86603 1.94131 1.30034 1.26433 1.20625 0.99073 0.90614 1.00828 0.92757 0.95359 0.95358 0.90561 0.90548 0.85293 0.85782 0.86211 0.92783 0.92705 0.77536 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 0.94 4.98 -27.89 -0.14 0.80 16 10 C -0.08 -1.68 4.27 37.16 0.16 -1.52 16 11 S -0.14 -2.67 21.92 -107.50 -2.36 -5.03 16 12 C -0.07 -1.25 6.11 -39.04 -0.24 -1.48 16 13 C -0.13 -2.00 9.36 -39.36 -0.37 -2.37 16 14 C -0.10 -1.35 10.04 -39.61 -0.40 -1.75 16 15 C -0.12 -1.46 9.70 -39.53 -0.38 -1.84 16 16 C -0.08 -1.07 5.51 -104.66 -0.58 -1.65 16 17 C 0.12 1.17 7.17 36.00 0.26 1.43 16 18 O -0.57 -5.88 13.64 -35.23 -0.48 -6.36 16 19 C -0.09 -1.31 9.45 -39.36 -0.37 -1.68 16 20 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.08 1.52 7.76 -51.92 -0.40 1.12 16 24 H 0.08 1.54 7.73 -51.92 -0.40 1.14 16 25 H 0.13 1.99 5.88 -52.49 -0.31 1.69 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.38 1.87 9.12 45.56 0.42 2.28 16 31 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -31.54 284.04 -8.50 -40.04 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -3.19 Total: -0.26 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -2.47 Total: -23.24 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.48 Total: -6.36 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.36 Total: -5.03 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.54 -8.50 -40.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085537272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.949 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds